Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 >seq4 Length=32756842 Score = 163 bits (180), Expect = 3e-35 Identities = 200/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 155304 TCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 155363 |||| | ||||||||| || | |||| || || |||| |||||| ||||||||| || Sbjct 25315225 TCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTTGCATATTC 25315166 Query 155364 TGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTT 155423 || | || | || | ||||| ||| | | || || | |||||||| ||| Sbjct 25315165 AGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTT 25315106 Query 155424 CTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGC 155483 ||| ||| |||||||| || |||||||||||||| |||| |||| | || || ||||| Sbjct 25315105 TTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGC 25315046 Query 155484 AGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGG 155543 || ||||| || ||||||||||| || |||||| | || ||||| ||||| ||||| || Sbjct 25315045 TGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 25314986 Query 155544 ATCTCTTTTCTCTGCTATGCACGGTTCATTGGT 155576 | || || ||||||||| |||| ||||| Sbjct 25314985 CTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584816594930200