Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4 132 1e-26 >seq4 Length=32756842 Score = 132 bits (146), Expect = 1e-26 Identities = 184/256 (72%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 40920 TGCATAGCAGCAAACA--AAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATG 40977 ||||||||| ||| | |||| | || || || || || || || | ||| || |||| Sbjct 25314965 TGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATGTGAAATG 25315022 Query 40978 GGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGA 41037 ||||||| ||||||||||| || ||||| || |||| ||| |||||||| || ||| || Sbjct 25315023 GGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGTTGAAAGTACCAGAGA 25315082 Query 41038 TTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAG 41097 |||||| ||||||||||| ||| ||| || ||||| | ||| || | ||||| |||| Sbjct 25315083 TTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 25315142 Query 41098 CTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTC 41157 | | | | || | | ||||| ||||| ||| ||||| | | ||||| || | Sbjct 25315143 CAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCAAAGACGTATACCCAGAC 25315202 Query 41158 TGTATGAAAGTTCCCA 41173 | | ||||||||| Sbjct 25315203 AGAAACTAAGTTCCCA 25315218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698057044030