Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4 188 8e-43 >seq4 Length=32756842 Score = 188 bits (208), Expect = 8e-43 Identities = 212/281 (75%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 67732 AAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTC 67791 || || |||| |||| |||||||||||||| || | || ||||||||||| ||||| | Sbjct 25314949 AATTACCAAG-GAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACAC 25315007 Query 67792 CAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGT 67851 | | ||| || |||||||||||||| ||||||||||| ||||| || || | ||| ||| Sbjct 25315008 CTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAAGT 25315067 Query 67852 TAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGAT 67911 | ||||||||||| || || |||||||| | | ||| ||| |||||||| | || | Sbjct 25315068 TGAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGGGT 25315127 Query 67912 AGACCAAGAACACAGCGAATGC---TGCAGACACTGGAGCAGAGTATGCTACACAGATCC 67968 ||| |||||| ||||| | | |||| || | ||| || ||||| ||| |||| Sbjct 25315128 AGATCAAGAAAACAGCAATAACAATTGCA---ACAGAAGCTGAATATGCAACAGCAATCC 25315184 Query 67969 AAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || |||| ||||| |||| | || ||||||||| | |||| Sbjct 25315185 AAAGACGTATACCCAGACAGAAACTAAGTTCCCAATCACGA 25315225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566929163992200