Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3 297 2e-75 seq4 172 6e-38 seq1 91.5 2e-13 >seq3 Length=44396707 Score = 297 bits (328), Expect = 2e-75 Identities = 454/643 (71%), Gaps = 7/643 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| | | ||||| || | ||| || || | ||||| || ||||||||| || | Sbjct 24110546 ATTAAAGAGTGCTTCCACGTGGTAAAACCTCCTCAGTGAATATAATGTTTTCATGAGGCT 24110487 Query 66646 G---ATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGT 66702 | ||| || |||| ||| | |||| |||||| || || ||||| || || |||| Sbjct 24110486 GCTGATCCTGAGCCGCCATCCAAGTGCGAATACCTTCGTTTAAAAGAATATTTTTAGTGT 24110427 Query 66703 AGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAG 66762 |||| || || || || || ||||| ||||| | || |||||||| | ||| |||| | Sbjct 24110426 AGAAAGTTTC-AAGTCCGGATCTTCCGCTGCACAAATTTCTTGGGAAATGAAGCCATAGG 24110368 Query 66763 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAG 66822 ||| ||||| | ||| ||||| | || | | | ||| ||| | ||| | || | Sbjct 24110367 CACATAGGTTCAAAGCTAGACCTACTATTACAAGAGCACTCATCCTTAAACCAGTTACTG 24110308 Query 66823 GAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCT 66882 | ||||| ||||||||||| || ||||| |||||| ||| ||| |||||||| Sbjct 24110307 GTACAAATAACATAAAGAATTGTAACCAATGTTTATTGGAAAAAGCAGCCCCAAAGATTC 24110248 Query 66883 GAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGA 66942 | ||||| |||||||| || || |||||||| ||||||||||| ||||| | | || | Sbjct 24110247 GTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAATTGGGTTAA 24110188 Query 66943 ATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTC--ATACAGAGTATTCTCTACTGTAAC 67000 | || || | ||||| ||||||| ||| ||| | | |||| ||||| ||| | Sbjct 24110187 AAGCACATAATTTATTTGCACCATCACCATTTTCAGATAAAAAATATT-TCTACAGTAGC 24110129 Query 67001 ACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAA 67060 ||||| ||| || | | || || | ||||| | ||| || | |||| || |||||| Sbjct 24110128 ACCATCAATAGCGCATAACAGAGCCGCGCCCAGTACACCGGCAATTCCCAGCAAATGAAA 24110069 Query 67061 CGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGA 67120 | |||| | ||| ||||| || ||||| | ||||| | ||||||||| || || | Sbjct 24110068 TGAATTCAGTGCCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGC 24110009 Query 67121 GACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGAC 67180 || || ||| || | || |||||| |||||||| || || || || |||||||| Sbjct 24110008 TACACCAAAACTAGGCACAAAGAACCAATCAGATTGACCTAGTGGATAAATTAGAAAGAC 24109949 Query 67181 ACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTG 67223 |||||||||||| || ||||||||||| | || | |||| Sbjct 24109948 TGAAACAAAAACAGCAATTGGACCAGAGAATGTGATTGTATTG 24109906 >seq4 Length=32756842 Score = 172 bits (190), Expect = 6e-38 Identities = 211/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 68211 AGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAAC 68270 |||| | |||| ||||| |||||| ||||| || || | || || ||||| ||||| || Sbjct 25314946 AGAAATTACCAAGGAACTATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTAC 25315005 Query 68271 GCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTA 68330 || | ||| || || |||||||| || ||||||||||| ||||| || || | ||| | Sbjct 25315006 ACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCTTGAAATACAACCATAAA 25315065 Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGG 68390 ||||||||||||||| || || |||||||| | | ||| || |||||||| | || Sbjct 25315066 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATTAGAAAAACTTCCTTGACCAATTGG 25315125 Query 68391 ATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCA 68450 |||| || ||| || || | |||||||| || || ||||||||| ||||| Sbjct 25315126 GTAGATCAAGAAAACAGCAATAACAATTGCAACAGAAGCTGAATATGCAACAGCAATCCA 25315185 Query 68451 AGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 | |||| ||||| |||| | ||||||||| ||||| |||| || Sbjct 25315186 AAGACGTATACCCAGACAGAAACTAAGTTCCCAATCACGATCCATATA 25315233 >seq1 Length=30920229 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 22712293 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 22712236 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 22712235 TCTACCACTGAGCTACTGAGGA 22712214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572036201519400