Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1473 96.9 6e-15 seq5 96.9 6e-15 seq3 96.9 6e-15 seq8 95.1 2e-14 >seq1473 Length=1387316 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || |||| || | ||||||| | | || || || ||||| || Sbjct 1201434 ATCCTCGAGTTGTTTACCATCAAACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCTT 1201493 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| || |||| ||| || | | ||| | |||||||||| || || Sbjct 1201494 GTCTTGAATTTTTGTCTTTACATTCTCAACAATGTCGAAGCTGTCAACTTCTAAGGTAAT 1201553 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | |||||| |||||||||||||| Sbjct 1201554 GGTTTTACCGGTGAACGTTTTCACAAATATTTGCAT 1201589 >seq5 Length=39062406 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || || ||||| || || || || || || ||||| Sbjct 24281582 ATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 24281523 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||| | || ||| |||||||| ||| || || | ||| || Sbjct 24281522 GTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGAT 24281463 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| | || || ||||| |||||||| Sbjct 24281462 AGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 24281427 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | | || || ||||| || || | ||| || ||| || Sbjct 24281435 AATTTGCATACCACCACGGAGCCTGAGAACGAGATGTAAAGTTGACTCCTTCTGAATGTT 24281376 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | | ||||| ||| || || || ||||||||||| || || ||||| || Sbjct 24281375 GTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTG 24281316 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || || || || || | ||| | || || || || || Sbjct 24281315 GTCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGCTTTAACGTTATCGATGGTGTCAGA 24281256 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 24281255 ACTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAGAGTCTTGACAAAGATTTGCAT 24281199 >seq3 Length=44396707 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || || ||||| || || || || || || ||||| Sbjct 21554328 ATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 21554387 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||| | || ||| |||||||| ||| || || | ||| || Sbjct 21554388 GTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGAT 21554447 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| | || || ||||| |||||||| Sbjct 21554448 AGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 21554483 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | | || || ||||| || || | ||| || ||| || Sbjct 21554475 AATTTGCATACCACCACGGAGCCTGAGAACGAGATGTAAAGTTGACTCCTTCTGAATGTT 21554534 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | | ||||| ||| || || || ||||||||||| || || ||||| || Sbjct 21554535 GTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTG 21554594 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || || || || || | ||| | || || || || || Sbjct 21554595 GTCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGCTTTAACGTTATCGATGGTGTCAGA 21554654 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 21554655 ACTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAGAGTCTTGACAAAGATTTGCAT 21554711 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || | |||| |||||| ||| || || || Sbjct 19893879 ATACCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCTTTCTGAATGTTGTAATCA 19893938 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| || |||| || ||||||||||| || | |||||| || || ||| Sbjct 19893939 GCCAGTGTTCTGCCGTCCTCTAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCTGGA 19893998 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| ||||| || ||| ||| Sbjct 19893999 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTGTCTATAGTGTCTGAACTCTCC 19894058 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || || || ||||| Sbjct 19894059 ACCTCCAGAGTGATGGTCTTCCCGGTCAGTGTCTTAACGAAAATCTGCAT 19894108 >seq8 Length=44809562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || ||||| | || | ||| || || || ||||| Sbjct 30326204 ATACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCA 30326145 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | ||| || | || || || ||||| || | ||||| ||||| || Sbjct 30326144 GCGAGCGTGCGCCCATCCTCCAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGT 30326085 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| |||||||| || || || | || | ||| || || || || |||| Sbjct 30326084 GGGATTCCCTCTTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTCTCA 30326025 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || |||||||| || || || || ||||| |||||||| Sbjct 30326024 ACCTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| | || || ||||| | || | ||| || || || ||||| Sbjct 30325748 ATACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCA 30325689 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || |||||||| || | ||||| || || || Sbjct 30325688 GCAAGAGTCCTTCCATCCTCGAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGT 30325629 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| |||||||| || || || | || | || || || ||||| ||| Sbjct 30325628 GGGATTCCCTCTTTATCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCG 30325569 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| || || |||||||| Sbjct 30325568 ACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 30325519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899625779744400