Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 seq4 89.7 8e-13 seq1473 87.8 3e-12 seq7 86.0 9e-12 >seq3 Length=44396707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| ||||| |||||||| || || || || || Sbjct 19912156 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 19912097 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || ||||| ||||| || || ||||| || || Sbjct 19912096 GACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 19912037 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || ||||| | |||||| ||||||||||| ||| |||||| Sbjct 19912036 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACT 19911992 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||||||| ||||| || || || || ||| Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || || ||||| || || || ||||| || || Sbjct 19894276 GATACCATCGACAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 19894217 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||| || |||||| Sbjct 19894216 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGAT 19894181 >seq4 Length=32756842 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 || ||| || |||||||||||||| ||||| || ||||| |||| | ||||||||||| Sbjct 5791524 AAAACAGGACAAAGAAGGCATACCACCAGACCAGCAAAGGCTGATCTTCGCCGGTAAGCA 5791465 Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTT 156028 ||||||||| | |||| || | ||||| || || |||||| | || |||||| | Sbjct 5791464 GCTCGAAGACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCT 5791405 Query 156029 AGTGTTAAG 156037 || || || Sbjct 5791404 CGTCTTGAG 5791396 >seq1473 Length=1387316 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 |||||||||||| | ||||| || || || ||||| ||||| |||||||| || || ||| Sbjct 1201589 ATGCAAATATTTGTGAAAACGTTCACCGGTAAAACCATTACCTTAGAAGTTGACAGCTTC 1201530 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | | || || || || | ||||| ||||| || ||||| || || ||| | | Sbjct 1201529 -GACATTGTTGAGAATGTAAAGACAAAAATTCAAGACAAGGAAGGGATCCCCCCAAACCT 1201471 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| ||| | || | || ||||| || ||||| ||| Sbjct 1201470 ACAGAGAATCATGTTTGATGGTAAACAACTCGAGGAT 1201434 >seq7 Length=41685129 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| ||||| || || || |||| || || || Sbjct 33846295 ATGCAGATCTTTGTCAAGACGTTGACCGGAAAGACGATCACCCTAGAGGTGGAGAGCTCC 33846236 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| |||||||| || || || || || || || || Sbjct 33846235 GACACCATCGATAACGTCAAGGCTAAGATACAAGACAAGGAGGGAATCCCACCTGATCAG 33846176 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||||||||| ||| |||||| || | || || || Sbjct 33846175 CAGAGGTTGATCTTCGCCGGGAAGCAGCTCGAGGATGGTAGAACTCTAGCTGACTACAAC 33846116 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| || ||| | ||||| Sbjct 33846115 ATCCAGAAGGAGTCGACTCTGCATCTGGTGTT 33846084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731848717322000