Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 107 4e-18 seq8 104 5e-17 seq1473 98.7 2e-15 seq7 91.5 3e-13 seq6 89.7 1e-12 seq2 87.8 4e-12 seq1 87.8 4e-12 >seq3 Length=44396707 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||||| || || || | |||| || ||| || || || || || Sbjct 19894107 ATACCCCCACGTAGACGTAAGACCAAGTGAAGTGTAGATTCCTTTTGA-ATGTTGTAGTC 19894165 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | ||| || ||||||||||| || ||||| || ||||| Sbjct 19894166 AGCAAGAGTACGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGG 19894225 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || ||||| || || || ||| ||||| || | |||||| || Sbjct 19894226 AGGAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTC 19894285 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||||||| ||||| || || || | ||| |||||||| Sbjct 19894286 CACCTCCAAAGTAATGGTTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 19894336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || | ||| ||||| | ||| || ||| || || ||| Sbjct 19912155 ATCCCACCACGAAGCCTGAGGACAAGATGCAAAGTCGACTCCTTTTGGATGTTGTAGTCA 19912214 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| |||| || | ||| || || || ||||| | ||||| ||||| ||| Sbjct 19912215 GCGAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGT 19912274 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || ||| || || ||| || | || || || Sbjct 19912275 GGGATTCCCTCCTTATCTTGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCC 19912334 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || || || ||||| || | ||||||||||| Sbjct 19912335 ACTTCAAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAATATCTGCAT 19912384 >seq8 Length=44809562 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 30326204 ATACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCA 30326145 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || ||||| |||||||| | ||||| ||||| ||| Sbjct 30326144 GCGAGCGTGCGCCCATCCTCCAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGT 30326085 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| |||||||| || || ||| || ||||| ||| | ||||| || Sbjct 30326084 GGGATTCCCTCTTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTCTCA 30326025 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||||||||| || | || || | ||| || ||||| Sbjct 30326024 ACCTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || | ||| | || | ||| ||| || || || ||||| Sbjct 30326432 ATACCACCACGGAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGA-ATGTTGTAATC 30326374 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || ||| |||| || | || || ||||||||||| | ||| || || || || Sbjct 30326373 CGCAAGAGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGG 30326314 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || || || || || || |||||| || | ||||| || Sbjct 30326313 TGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTC 30326254 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||||||||| || | || || | ||| |||||||| Sbjct 30326253 AACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAAATCTGCAT 30326203 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || || || | ||| | ||| || ||| || ||||||| Sbjct 30326885 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 30326826 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || | |||| || | ||||||||||| ||||| | ||||||||| || || || Sbjct 30326825 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 30326766 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || ||| || ||||| || | ||||| || ||| Sbjct 30326765 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACT 30326706 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || || || || || || || || | ||| || ||||| Sbjct 30326705 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTGACAAAGATTTGCAT 30326659 >seq1473 Length=1387316 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | |||||||||| |||| || | ||||||| | | || || || ||||| | Sbjct 1201433 CATCCTCGAGTTGTTTACCATCAAACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCT 1201492 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT-GACGAT-TCTACTTCTAGAGT 192497 | ||||| ||||| | |||||||| | | ||| | || | | || ||||||| || Sbjct 1201493 TGTCTTGAATTTTTGTCTTTACATTC--TCAACAATGTCGAAGCTGTCAACTTCTAAGGT 1201550 Query 192498 AATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||||||| || || ||||| | |||||| |||||| Sbjct 1201551 AATGGTTTTACCGGTGAACGTTTTCACAAATATTTGCATT 1201590 >seq7 Length=41685129 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || | ||| | ||| | ||| || ||| || || |||| || |||| Sbjct 33846078 AGACGCAACACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTA 33846137 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | || || || || ||||| || ||||| ||||||||||| ||||| || Sbjct 33846138 CCATCCTCGAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGATCAGGTGGGATTCCCTCC 33846197 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || |||||||| ||| || || ||| || | || || || || ||||| || Sbjct 33846198 TTGTCTTGTATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCACCTCTAGGGTG 33846257 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || | ||| |||||||| Sbjct 33846258 ATCGTCTTTCCGGTCAACGTCTTGACAAAGATCTGCAT 33846295 >seq6 Length=32494073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | || || || || | ||| | |||||| ||| || || |||| Sbjct 1228768 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCC 1228709 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||| | ||||||||||| |||||| Sbjct 1228708 AGCGTTCGGCCATCCTCTAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATCTGGTGGT 1228649 Query 192430 ATTCCTTCTTTATCTTG 192446 || || ||||| || || Sbjct 1228648 ATCCCCTCTTTGTCCTG 1228632 >seq2 Length=44367670 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| || || || || ||||| | || ||| ||||| ||||| || ||||| || Sbjct 7315975 TCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGGGATGCCTTCCTTG 7315916 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || ||| ||||| || | ||||| ||||| || ||||| || || Sbjct 7315915 TCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCTGATGATTCGACCTCTAGGGTTATC 7315856 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || |||| ||||| | ||| ||||||||||| Sbjct 7315855 GTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 7315818 >seq1 Length=30920229 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||||| | | || || |||| || | | || ||| | |||| || | ||| Sbjct 27436839 GATGTTATAATATGCAAGCGTGCGACCATCTTCGAGTGGTCTACTACCAAACATGATTCT 27436898 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| ||||| || ||||| || ||||| || || | |||||| || | | | | Sbjct 27436899 CTGTTGATTTGGTGGGATCCCTTCCTTGTCTTGAATCTTTTCCTTTACA-TACTCA-ACA 27436956 Query 192474 A--TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATC 192531 | ||| | || ||||||| ||||||||||||| | | |||||||| | ||||| Sbjct 27436957 ATGTCTAAGCTGTCAACTTCTAAGGTAATGGTTTTACGACTGAATGTTTTCACGAATATT 27437016 Query 192532 TGCATT 192537 |||||| Sbjct 27437017 TGCATT 27437022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984447898260750