Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1473 96.9 6e-15 seq3 95.1 2e-14 seq1 84.2 4e-11 >seq1473 Length=1387316 Score = 96.9 bits (106), Expect = 6e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||| |||| || | ||||||| ||| || || || ||||| || Sbjct 1201435 TCCTCGAGTTGTTTACCATCAAACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCTTG 1201494 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT-TCTACTTCTAGAGTAAT 172033 ||||| ||||| | |||||||| | | | || || | | || ||||||| ||||| Sbjct 1201495 TCTTGAATTTTTGTCTTTACATTCTCAACAATGTC-GAAGCTGTCAACTTCTAAGGTAAT 1201553 Query 172034 GGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||||| || || ||||| | ||||| |||||| Sbjct 1201554 GGTTTTACCGGTGAACGTTTTCACAAATATTTGCATT 1201590 >seq3 Length=44396707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || ||||| || || || | |||| || || ||| || || || Sbjct 19894107 ATACCCCCACGTAGACGTAAGACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCA 19894166 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| || |||||||| || || ||||| |||||||| Sbjct 19894167 GCAAGAGTACGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGA 19894226 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || ||| ||||| || |||||||| || Sbjct 19894227 GGAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTCC 19894286 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| ||||| || || || | || |||||||| Sbjct 19894287 ACCTCCAAAGTAATGGTTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 19894336 >seq1 Length=30920229 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 || ||| | |||| || | ||||||||| | ||||| || ||||| || ||||| || | Sbjct 27436877 GTCTACTACCAAACATGATTCTCTGTTGATTTGGTGGGATCCCTTCCTTGTCTTGAATCT 27436936 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 | | ||||||| | | | ||| | || ||||||| ||||||||||||| | Sbjct 27436937 TTTCCTTTACATACTCAACAATGTCTAAGCTGTCAACTTCTAAGGTAATGGTTTTACGAC 27436996 Query 172045 TTAATGTTTTAATGAATATCTGCATT 172070 | |||||||| | |||||| |||||| Sbjct 27436997 TGAATGTTTTCACGAATATTTGCATT 27437022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905107205361000