Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 118 3e-21 seq4 96.9 1e-14 seq7 91.5 4e-13 seq2 89.7 2e-12 >seq8 Length=44809562 Score = 118 bits (130), Expect = 3e-21 Identities = 286/425 (67%), Gaps = 20/425 (5%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| | Sbjct 26146640 TAAACCCGTCCATCTCGGTTAAAATCTGGTTCAGCGTCTGCTCACGTTCGTCGTTTCCTC 26146581 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| || || | |||||||||||||| || |||||||| | Sbjct 26146580 CTCCTAAA----CCGGTTC-CTC-TTATTCTCCCAACAGCATCAATCTCATCAATGAACA 26146527 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 || ||| || || | |||| || | ||| || || ||||| || | ||||| Sbjct 26146526 CCAAACAGGGTGAGTTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGATGC 26146472 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| ||| || ||| |||| | | || || | || Sbjct 26146471 TCCTACACCAACAAACATCTCTATAAACTCCGAACCGGACAATGAAAAAAACGGAACTCC 26146412 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| || ||||| || ||||| | Sbjct 26146411 AGCTTCTCCAGCTATGGCCTTGGCCAAGAGAGTCTTTCCGGTTCCTGGCGGTCCTGTCAG 26146352 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAA 289290 | || || ||||| | ||| || |||| || || | ||||||| || | || | Sbjct 26146351 CAAGACACCTTTTGGGATTTTAGCACCCA--AGGCTGAGAATTTCTCTGGTGTTTTCAGG 26146294 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 ||||| || || || |||| || | || || || || |||||| ||||| |||| Sbjct 26146293 AATTCAACGATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACATCCTCAAAT 26146234 Query 289351 GTAAT 289355 || || Sbjct 26146233 GTTAT 26146229 Score = 86.0 bits (94), Expect = 2e-11 Identities = 303/469 (65%), Gaps = 16/469 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| ||||| || ||||| || | |||| || | | | || ||| |||||| Sbjct 32327803 ATATCTGCTCTATTGGTTGCAGCAACCACAATAACACCAGTGTTACCCTCAAACCCATCC 32327744 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || || | |||||||| || || || || |||||||| ||||| || Sbjct 32327743 ATCTCAGTCAAGAGCTGATTAAGCGTCTGCTCTCTCTCATCATT---ACCTC------CA 32327693 Query 289009 CCCGAATCG----CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || || || | ||| | |||||||||||||||| ||||| | |||| | || Sbjct 32327692 CC-GATTCCAGTTCCCCTCTGCCTACCAACAGCATCAATCTCGTCCACAAAAACAATGCA 32327634 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 ||||| ||| | | || || || | || | || | || || |||| ||| || Sbjct 32327633 CGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGAC 32327574 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| |||||| | || | | || | ||| | ||| ||||| || | Sbjct 32327573 AAACATCTCAACAAACTCAGAACCCGAGA-TGGAGAAGAAAGGCACACCGGCTTCACCAG 32327515 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | ||| |||||| || || ||||| || ||||| || || | | || || || | Sbjct 32327514 CAATGGCCTTCGCCAAGAGGGTTTTACCAGTACCAGGAGGACCAACAAGAAGGACACCTT 32327455 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| | | | | ||||||| |||| | ||| || || | || Sbjct 32327454 TCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTT 32327395 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | || || |||||| ||| || || ||| ||||||| Sbjct 32327394 CCATGAAATCTTGCTTGGCTTCATCAACTCCAGCAACGTCATCAAAAGT 32327346 >seq4 Length=32756842 Score = 96.9 bits (106), Expect = 1e-14 Identities = 310/471 (66%), Gaps = 20/471 (4%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCAT 288946 ||||| |||||||| ||||| || | ||| | | | | | ||| ||| ||| |||| Sbjct 20996445 ATATCTGCTCTGTTGGTTGCAGCAACTACGATGACACCAGT--GTTACCTTCAAAACCAT 20996388 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| || || | |||||||| || ||||| ||||||||||| ||||| Sbjct 20996387 CCATCTCCGTCAAGAGCTGATTAAGCGTCTGTTCTCTTTCATCATT---ACCTC------ 20996337 Query 289007 CACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 || || | || | |||| ||| ||||||||||||| ||||| || | || | | Sbjct 20996336 CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAGACAATG 20996278 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || |||| |||| | || || || | || | || | || || |||| ||| Sbjct 20996277 CAGGGAGCGTTTTCCTTGGCCTTTTTGAAAAGATCACGGACCCTTGAAGCACCAACACCG 20996218 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCT 289182 ||| |||| || ||||| ||||| | || | | || ||| | |||| ||||| || Sbjct 20996217 ACAAACATCTCAACAAACTCAGACCCCGAGATTGAAAAGAAAGGTACACCAGCTTCACCA 20996158 Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242 || | ||| | ||||| || || || || || ||||| || || | | ||||| || Sbjct 20996157 GCAATGGCCTTTGCCAGGAGGGTTTTCCCCGTACCAGGAGGACCAACAAGGAGAACACCT 20996098 Query 289243 TTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATT 289302 || || | | || ||| | | | | ||||||| |||| | ||| || || | | Sbjct 20996097 TTCGGGATTCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACT 20996038 Query 289303 TCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | ||| || | || || ||||| ||| || |||||| | ||||| Sbjct 20996037 TCCATGAAG-TCTTGCTTGGCTTCATCGACTCCAGCAACATCATCGAAAGT 20995988 >seq7 Length=41685129 Score = 91.5 bits (100), Expect = 4e-13 Identities = 355/544 (65%), Gaps = 28/544 (5%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | ||||| |||| |||||||||||| |||| | || Sbjct 18320140 CCAGCAACATCAGGCCTATCCACCGTCACCTGCCTATCAAACCTCCCAGGCCTCAACAAC 18320081 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACA---ACAATAGATTCGGTT 288933 || | ||| | | ||| | |||||| || || ||||| ||| ||| ||| ||| Sbjct 18320080 GCAGAGTCAAGAACATCAGGTCTGTTCGTAGCAGCCAACACAATCACACCAGA----GTT 18320025 Query 288934 TGCTTA-AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATT 288992 | | || |||||||| || || | ||||||| || || ||||| |||||||| Sbjct 18320024 ACCAGAGAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATT 18319965 Query 288993 TGAACCTCTTGAATCACCCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCA 289050 |||| | || || | |||||| | | | || ||||||||||| || ||| Sbjct 18319964 ---CCCTCCT--CCCATCCCA---GCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCA 18319913 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 || |||| | ||| || | || | || | |||| || || || || | || Sbjct 18319912 ATAAAAACAATACAAGGCGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGAC 18319853 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTAC 289169 || |||| ||| ||| | | || ||||| |||||||| | | || | ||| | || Sbjct 18319852 GCACCAACACCGACAAAAAGCTCAACAAACTCAGAAGCCG-CGCAAGAGAAGAACGGCAC 18319794 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 ||||| || || || || || || | ||| |||||||| || ||||| || || | Sbjct 18319793 TCCAGCTTCTCCAGCCACGGCTCTAGCTAAAAGCGTCTTACCAGTCCCAGGAGGCCCAAC 18319734 Query 289230 TAATAGAACTCCCTTT-GGTACTTTTGC-CCCA--GCAGACTTATATTTCTCAGGGCTCT 289285 | || || |||||| || | || || |||| |||| | || || || || ||| Sbjct 18319733 AAGGAG-ACACCCTTTAGGAATCTTAGCGCCCAAGGCAG---TGTACTTGTCCGGATTCT 18319678 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 | ||||| || |||| ||||| | || || |||| || ||| || ||||||| Sbjct 18319677 TCAAAAAGTCGACAACTTCCTGCAACTCGAGCTTAGCCTGGTCGGCTCCAGCGACATCAG 18319618 Query 289346 CAAA 289349 | || Sbjct 18319617 CGAA 18319614 >seq2 Length=44367670 Score = 89.7 bits (98), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCG-TCATATA 251461 |||||| || ||||| | | ||||||||| || ||||| ||||| | | | ||| | | Sbjct 36859553 GGCGATGAGCCCACAGGTTTCACACACATGCACCCTGTACGCATC-GCTCTGATCAAACA 36859611 Query 251462 GCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 ||| | || ||| | |||||||||| |||||| ||||| || |||||||| | Sbjct 36859612 GCCTCTCTTTCAGAAAGTTGGCAGCACCGTGTGCAATCATGCAATCGCGTTCCATTTCTC 36859671 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 | ||||| ||||||||||| || | || || || || ||||| Sbjct 36859672 CAAAACGCAGACCACCATCACGTGATCTTCCTTCAGCCGGCTG 36859714 Score = 84.2 bits (92), Expect = 6e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||| Sbjct 36859634 AGCACCGTGTGCAATCATGCAATCGCGTTCCATTTCTCCAAAACGCAGACCACCATCACG 36859693 Query 233332 TGACCTACC 233340 ||| || || Sbjct 36859694 TGATCTTCC 36859702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471769607247665