Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 seq4 165 9e-36 seq8 138 1e-27 >seq3 Length=44396707 Score = 219 bits (242), Expect = 5e-52 Identities = 437/643 (68%), Gaps = 7/643 (1%) Strand=Plus/Plus Query 159674 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCC 159733 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 159734 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 159793 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 159794 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGT 159853 | | | || | ||||| ||||| || ||| | | ||| | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 159854 TGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 159913 ||| ||| |||| || | || || | | || || |||| | ||||||||| || | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 159914 ACTGTA--TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAG 159971 | || |||| |||| || ||||||| || || ||| | ||| ||||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 159972 GAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160031 || || ||||| || |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 160032 TTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160091 ||||| || || | ||| | || ||||| ||||| ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 160092 ACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGT 160151 | || ||| || | || || ||| | || || |||| || | ||| | Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 160152 CAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTA 160211 ||||| || | ||||| |||||||| | | |||| || |||||||| ||||| || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 160212 TTGAACGAAGGACTACGTGCATGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTT 160268 || |||||||| | || | ||| |||| || | | | || || ||||||||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 160269 ATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || ||| | || || || || || | || | | | ||||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 24110546 >seq4 Length=32756842 Score = 165 bits (182), Expect = 9e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 || |||| ||||| ||||||||| | | || | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||| | || || | |||||| ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158146 || ||||| || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 158147 TTCGGTGGATCTCTTTTCTCTGCTATGCA 158175 ||||| || | || || ||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq8 Length=44809562 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||| | || ||||| || || ||||| ||| | || | ||||||||| ||||||||| Sbjct 31673065 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 31673006 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 ||||||| |||||||||||| |||| |||||| ||||||| ||| ||| ||| Sbjct 31673005 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 31672946 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 ||| | || ||||| |||||||| | |||||| ||||| || |||| || ||||| || Sbjct 31672945 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 31672886 Query 158930 TCTGAT 158935 |||||| Sbjct 31672885 TCTGAT 31672880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548356954839400