Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3 300 2e-76 seq4 168 7e-37 seq8 122 1e-22 seq6 91.5 2e-13 seq2413 86.0 7e-12 >seq3 Length=44396707 Score = 300 bits (332), Expect = 2e-76 Identities = 452/638 (71%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 152739 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 152798 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 152799 TCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATT 152858 || |||||||| |||||| || | || ||| || || || || || || ||||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 152859 CCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGT 152918 | | ||||| | ||||| || || || ||| || ||||| | |||||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 152919 TGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 152978 ||| ||| | |||| | ||| || | | || ||| |||||| ||| ||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 152979 TTTGTATC--AAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAA 153036 ||| |||| || ||||||| ||||| | || ||||| || | ||||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 153037 GAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCT 153096 ||||| || ||||| ||||| || |||||||| || ||||| | || ||||| |||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 153097 TTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGG 153156 ||| |||||||| ||| | || ||||||||| | |||||||| || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 153157 ACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCT 153216 | | || ||| ||| | ||||| ||| | || || |||| || | || | || Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 153217 CAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTT 153276 |||||||| | || | |||||||| | | |||| || ||||| || || ||||| ||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 153277 TTGAACGAAGGTCTTCGTGCTTGGTTGGCACCT---GTTGACCAACCTCATGAGAACTTC 153333 || ||||||||| |||| ||||| |||| || | | | || |||||||| ||| | Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 153334 GTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 | ||| |||| ||||| || ||||| || | | |||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 168 bits (186), Expect = 7e-37 Identities = 213/290 (73%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-G 151223 ||| |||| |||||| |||||||| || | | ||||||| |||| ||||| ||| | Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGAT-TGCTG 25315176 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 ||||||| || ||| | ||||| || | ||| || ||| | |||| || | |||| Sbjct 25315175 TTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTC 25315116 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343 |||| ||| ||| ||| ||||| || || || ||||| || ||||||| ||| ||| Sbjct 25315115 AAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTG 25315056 Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTG 151403 | || ||||| |||||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 25315055 TATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 25314996 Query 151404 TCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCT 151453 | ||||| || | || || || ||||| |||| |||| | |||| Sbjct 25314995 TATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCT 25314946 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||| ||||||||||| |||||||| ||||| ||| ||| ||||| || ||||||| Sbjct 270388 AAGACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGTGTTGACTTGCCTTACTCTT 270329 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGA 152112 | | || ||||| |||||| | || || |||||||| | || || |||||| ||| Sbjct 270328 GCAGAGCCGGTGCGTGTTCCACCTGCGCCGGTAAGATCGAGAAAGGCCAAGTTGACCAGT 270269 Query 152113 GTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTG 152172 ||| || || | || ||| | || || || ||| | || |||| ||||| | Sbjct 270268 CTGATGGTTCGTTTCTTGAAGATCATCACATAGAGAAAGGTTATGTCTTGACTTGTGTGG 270209 Query 152173 CATATCC 152179 | || || Sbjct 270208 CTTACCC 270202 >seq8 Length=44809562 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || |||||||||||| ||| | || || |||||||| ||||||||| Sbjct 31673065 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 31673006 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || ||| ||||| ||||| ||||| ||| | ||||| ||| |||||| Sbjct 31673005 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 31672946 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||||||||||| ||||||||| || || |||| || ||||| ||| Sbjct 31672945 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 31672886 Query 152184 TCTGATGTCACC 152195 |||||||| ||| Sbjct 31672885 TCTGATGTTACC 31672874 Score = 120 bits (132), Expect = 3e-22 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 152547 AGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 152606 || ||||||||| || || | | | |||||| | || || |||| |||||| || Sbjct 15117852 AGCTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGC 15117911 Query 152607 TCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCA 152666 ||||| ||||| | ||| ||| || || || | ||||||||||| || ||||| Sbjct 15117912 ACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCA 15117971 Query 152667 CGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCG 152725 | | |||||| | |||| ||||| ||| | | | |||||||| || || ||| || Sbjct 15117972 CTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCA 15118031 Query 152726 GTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 152785 | | || || || ||||| |||| |||| ||||| || | |||||||||| ||||| Sbjct 15118032 AT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCT 15118090 Query 152786 TTCTCATCTACCCTCTGG 152803 |||| || || ||||||| Sbjct 15118091 TTCTAATTTATCCTCTGG 15118108 >seq6 Length=32494073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || |||||||||||| ||| | || || |||||||| ||||| ||| Sbjct 22685559 TACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 22685500 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || || || || ||||| ||||| ||| | ||||| ||| |||||| Sbjct 22685499 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGT 22685440 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||||||||||| ||| || || || || || | || || || ||| Sbjct 22685439 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTACT 22685380 Query 152184 TCTGATGTCACCCTC 152198 |||||||| ||| || Sbjct 22685379 TCTGATGTTACCATC 22685365 >seq2413 Length=755821 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 ||| || | || ||||| |||||| || | || || |||||||| ||||| ||| Sbjct 504594 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 504535 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 | || || ||||| ||||| ||||| || | ||||| ||| |||||| Sbjct 504534 TCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGT 504475 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||| | |||||||||||||||| ||| || || || || |||| || ||||| ||| Sbjct 504474 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCGTATCCTACT 504415 Query 152184 TCTGATGTCACC 152195 ||||| || ||| Sbjct 504414 TCTGACGTTACC 504403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549604915137400