Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 >seq3 Length=44396707 Score = 134 bits (148), Expect = 2e-26 Identities = 401/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Plus Query 73788 TCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCG 73847 |||||||||| ||||| |||| || | ||||||||| | ||| || ||||| | Sbjct 24109950 TCTTTCTAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAG 24110009 Query 73848 CAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCAT 73907 | || || ||||| | || | || | || || || || ||| | || ||| ||| Sbjct 24110010 CGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCAT 24110069 Query 73908 TTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTG 73967 ||||| || |||| | || ||| |||| || | || | |||| || || |||||| Sbjct 24110070 TTCATTTGCTGGGAATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTG 24110129 Query 73968 CAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAAT 74027 | || ||| ||| | ||| | | ||| || | ||| ||| | | ||| Sbjct 24110130 CTACTGTA--GAA-ATATTTTTT--------ATCTGAAAATGGTGATGGTGCAAATAAAT 24110178 Query 74028 CTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTG 74087 | | || || | || | || | ||||| |||||| ||| | || | Sbjct 24110179 ---------TATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCG 24110229 Query 74088 CTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACT 74147 ||||| | || ||||||| || ||||| || ||||| || ||| | ||||| | Sbjct 24110230 CTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAAT 24110289 Query 74148 TCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTC 74207 || ||||||| || ||||| || | ||| | ||| || | | || ||||||| Sbjct 24110290 TCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTC 24110349 Query 74208 TAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACC 74267 |||| | ||||| | || || | ||| | || ||||| || | ||||| ||||| | Sbjct 24110350 TAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATC 24110409 Query 74268 CAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGA 74327 | || || ||||| ||||||||||| || |||||| | || |||||||| | | |||| Sbjct 24110410 CGGACTT-GAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGA 24110468 Query 74328 TGTCATCTGTCGAT---CAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCAC 74384 || | || ||| || || ||||| ||| || | ||| | || || || || |||| Sbjct 24110469 TGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCAC 24110528 Query 74385 GAGGCAACGCACTATAA 74401 | || | | | || ||| Sbjct 24110529 GTGGAAGCACTCTTTAA 24110545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572855375458600