Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq1239 113 9e-21 >seq1239 Length=2566 Score = 113 bits (124), Expect = 9e-21 Identities = 643/1006 (64%), Gaps = 47/1006 (5%) Strand=Plus/Plus Query 1492 CACCAACTGGAATACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTT 1551 ||||| | ||| || ||| ||||| |||||| ||| |||||||||| | |||||| Sbjct 1447 CACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTT 1506 Query 1552 GTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCTGC-GCGGCAAAGTCCATGCCTTTCC 1610 | | ||| ||| | ||| | |||||| ||| || | | | || || Sbjct 1507 GAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACG-TCCCCCGCC 1565 Query 1611 ACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGA 1670 | ||| |||||| || || |||||||| |||| ||| ||||| || | || | Sbjct 1566 AGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAA 1625 Query 1671 CACATCCGGCACTGTCGCCAGTGTGGGAC--GGGTCGTAGCCAATCCAGACCGGGCGCGA 1728 | || || ||||| | || ||| ||||| || || | |||||||||||| Sbjct 1626 CGCACGTCGCGTCGTCGC--GGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTT 1683 Query 1729 GCCGAACGGGTGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCAT 1788 | ||||||| | | | |||| || |||| |||| ||| || || | Sbjct 1684 GTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA- 1740 Query 1789 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGA-TGCCTTATCGTCGACAAACTCGCACA 1847 |||||||| ||| || || | |||| | | || | | ||||| |||| ||||| Sbjct 1741 GCAGCGCTCCAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCT-GTCGATGAACTTGCACA 1799 Query 1848 TAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTG-AGCTGGTCGAGGTCGAAC 1906 | ||||| | | ||| ||| || || || | ||| || | || ||||||||| Sbjct 1800 TGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAG-CTGCAGGCGCTCCAGGTCGAAC 1858 Query 1907 AGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCA 1966 ||| ||||||| ||||| | |||||| | ||| |||| | || |||||||| ||||| Sbjct 1859 AGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCC 1918 Query 1967 GCGCAAAGAAGCCCACCGGC---GAGC-GCGCTGTGACTGATGTCGATTTCGATGCGGTC 2022 | ||| | | | ||||| || | ||||| | ||| | | | || ||| | Sbjct 1919 GGGCACAA---CGCGCCGGCATGGATCTGCGCTTCG-CTG--GGCCA---CGGCCCGGCC 1969 Query 2023 AGCAGCACTGGCGCGCCCCTTGTTG---AACAGCTCGCCAGACCAGAAGGGATAAGCGCC 2079 | | ||||| ||||| ||| |||||| | |||| | ||||| || Sbjct 1970 TTCT----TTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTG 2025 Query 2080 GTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCAT 2139 ||||| | || | || || || ||||| || |||| | ||||||||||| Sbjct 2026 GTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCAT 2085 Query 2140 GCCCGAT-GCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACAT 2198 | || | || || | |||||||||| ||||| ||||||||||| | ||| |||| | Sbjct 2086 -CGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGT 2144 Query 2199 ACAGGTCGCCGTTATGGCTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTG 2258 | | || ||||| | ||| || || |||||| || || |||||| ||| | | Sbjct 2145 AGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCG 2204 Query 2259 C---------GCCGTTGTTGCCGATAACAATCGGGTCGCCGGTCAGGTCGACGTC-AACC 2308 | ||||| |||| | | || || | ||||| ||| |||| || |||| Sbjct 2205 CCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACC 2264 Query 2309 AGT-CGC-GCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCG 2366 | | ||| || ||| || |||||| |||||||| | | ||| | || || | Sbjct 2265 ATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGG 2324 Query 2367 ACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGT 2426 |||| ||||||||||| | |||||| | ||| || | || ||| || |||| Sbjct 2325 ACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGT 2384 Query 2427 AGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACG 2472 || | ||| || |||||||| || || || |||| ||| || || Sbjct 2385 AGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95049927326160