Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 226 3e-53 seq6 208 9e-48 >seq8 Length=44809562 Score = 226 bits (250), Expect = 3e-53 Identities = 228/295 (77%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||| ||||| ||||| | | |||| | || ||| Sbjct 36833426 GAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACCTGG 36833485 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| ||| || |||||| ||||| |||||| ||||||||| Sbjct 36833486 ACGTCGGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAG 36833545 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| ||||||||||| ||||| |||| | |||||| | Sbjct 36833546 AAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGT 36833605 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| | |||||| || |||||||||||||||| |||||||||||||| |||||| Sbjct 36833606 GTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 36833665 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 |||||||| | || |||| |||| ||||| | | || | || |||||||| Sbjct 36833666 ATCTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAATCTGTCTGGGGTTG 36833720 Score = 118 bits (130), Expect = 1e-20 Identities = 216/314 (69%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| |||||||| || |||| ||||||||| Sbjct 36832832 GCCTTCTGGTAATCACCAACCCTCTTCTCGAAGAAGTTGGTTTTCCCCTGAAGCGAGATC 36832891 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||||||||| ||||| || | || ||| ||| || | || |||| | | Sbjct 36832892 AACTCCATCCAATCAAACGGATTCGCCGCACCGTACACCTTCCCGTACCCAAGCGCCCCC 36832951 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || || ||||||||||| ||||| | ||| | | |||||| || | Sbjct 36832952 AAAAGCCTATCCGCCACAAACTCGATATACTGACTCATCAAATCACGGTTCATCCCCACC 36833011 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| ||| |||| |||| ||||||||| |||||||||| ||||| ||| | | Sbjct 36833012 AACGCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACGGCGTCGCACACG 36833071 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || ||| | |||| | || | ||||||| |||||| || Sbjct 36833072 ATC-GACTTCACGCGCTCCTCCGTGAGCTTCGTCCTCAGGAGGGTGTAGATCAGGCACGC 36833130 Query 868990 AAAGTCGCAGTGCA 869003 || |||||||||| Sbjct 36833131 GAAATCGCAGTGCA 36833144 >seq6 Length=32494073 Score = 208 bits (230), Expect = 9e-48 Identities = 226/298 (76%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||| ||||| ||||| | |||| | || || Sbjct 29608851 GAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGAGACCTGC 29608910 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| ||| ||||||||| ||||| |||||| ||||||||| Sbjct 29608911 ACGTCGGACATGAACCGAGAGGCGAGGTTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 29608970 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| |||| ||||||||||| |||||||||| | |||||| | Sbjct 29608971 AAGGCGAGGACGTGTTTGACGAAGTGGCGCTCTCCGTCGCTGAGATTTTCCTCCCAGTCG 29609030 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || ||| | |||||| || |||||||||||||||| ||||| ||||| || ||| Sbjct 29609031 CGGGGGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTG 29609090 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||| | || ||||| |||| ||||| | | || | || |||||||| Sbjct 29609091 TACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACATGCAGAATCTGTCTGGGGTTG 29609148 Score = 120 bits (132), Expect = 4e-21 Identities = 182/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| |||| ||| || |||||||| || |||||||| ||||| ||||| Sbjct 29608586 GATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGAT 29608645 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 | |||||| || || ||||| || || || || ||| ||||| | | || || ||| Sbjct 29608646 CGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTC 29608705 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 |||||||| | ||| || || ||||||| ||| ||||| | |||||| ||| Sbjct 29608706 GGCAAAGGCCT-GAGATCC-----GTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGC 29608759 Query 869374 CACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGAC 869433 || | || | ||| ||||| ||||| ||||| || ||| | || ||||||| Sbjct 29608760 GACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGAT 29608819 Query 869434 ATAGGTGTCGATCAGGAG 869451 || || || | |||||| Sbjct 29608820 GTAAGTATCTAACAGGAG 29608837 Score = 100 bits (110), Expect = 3e-15 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||| || || |||| |||||||||||||||||||| ||||| || | Sbjct 29608283 CTCGAAGAAGTTAGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 29608342 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | ||| ||| || | || |||| | | || | || || || ||||| || Sbjct 29608343 CACACCGTACACCTTCCCGTACCCAAGCGCACCCAACAACCTATCCGCCACGAACTCAAT 29608402 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 ||||| | ||| || | |||||| || | | ||| ||| |||| |||| ||| Sbjct 29608403 ATACTGACTCATCAGTTCACGGTTCATCCCCACCAACGCGCACGGGAGCGCGTCGCACAC 29608462 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCGGCCGA 868953 |||||| |||||||||| || || ||| | |||| ||| |||| || |||| Sbjct 29608463 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCT---CACGCGCTCCTCCGA 29608519 Query 868954 GGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA 869003 | |||| | || | | ||||| |||||| || ||||||||||||| Sbjct 29608520 GAGCTTCGTCCTCAGGAGGGAGTAGATCAGGCACGCGAAGTCGCAGTGCA 29608569 Score = 91.5 bits (100), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| || || ||||||||||| ||||| | |||||| || || ||||| ||| Sbjct 11620248 CCAGGCATGAGCCCTCGTTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAG 11620189 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || ||| || ||| ||| ||| | || ||| || ||||| | ||| | || Sbjct 11620188 ATCCCTTCGGCGCAGGCGAAGGCGACGCTCCTCTCCGCGAAGGTCT-GAGATC-----TG 11620135 Query 869339 TTGATCCACTTCATCGCCCA 869358 | ||||||| |||||||||| Sbjct 11620134 TCGATCCACGTCATCGCCCA 11620115 Score = 89.7 bits (98), Expect = 6e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 868823 GCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGC 868882 || ||||||||||| ||||| | ||| ||| | |||||| || | ||||| ||| Sbjct 11620431 GCCACAAACTCGATATACTGACTCATCAGGTCACGGTTCATCCCCACCAGCGCGCACGGG 11620372 Query 868883 AGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGC 868942 |||| | || ||||||||| ||||||||||||||||| || || |||| | || | Sbjct 11620371 AGCGCGTAGCACACAAACTCCTTCTCGATCTCGACGGCATCCCAGACGATC-GACTTCAC 11620313 Query 868943 ACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTG 869001 || || ||| | | || | || | ||||| | ||||||||| || |||||||| Sbjct 11620312 GCGCTCCTCCGTGAGATTCGTCCTCAGGAGGGTGTATATCAGGCAGGCGAAATCGCAGTG 11620253 Query 869002 CAACCC 869007 ||| || Sbjct 11620252 CAAACC 11620247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106930345381765