Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq8 102 7e-17 seq4 82.4 6e-11 >seq3 Length=44396707 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || ||| | || || || ||||| ||| |||| ||| | Sbjct 19894564 ATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAACTCC 19894505 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| |||||| || || |||||| | ||| |||||| Sbjct 19894504 GACACCATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGATCAG 19894445 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | || || || |||||||| || | |||||| |||| ||||||||| Sbjct 19894444 CAAAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGCAGAACCCTGGCCGATTACAAC 19894385 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| | ||| |||| | || || || || || Sbjct 19894384 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCAGGCTCCGTGGTGG 19894338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | ||||| || ||||| || | || |||| | Sbjct 19894108 ATGCAGATTTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCA 19894049 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||| ||||| |||||| | || || || Sbjct 19894048 GACACTATAGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 19893989 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| ||||| | ||||||| |||| ||||||||| Sbjct 19893988 CAGAGACTCATCTTTGCCGGAAAGCAGCTAGAGGACGGCAGAACACTGGCTGATTACAAC 19893929 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||| |||||| | ||| |||| || Sbjct 19893928 ATTCAGAAAGAGTCTACGCTTCACTTGGTCTT 19893897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| || || ||||||||||| | || |||| | Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| |||||| || || || || | || || || Sbjct 19894276 GATACCATCGACAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 19894217 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || || || || |||| | || | || || |||||| Sbjct 19894216 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 19894157 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | ||| |||| ||| | || || ||||| Sbjct 19894156 ATTCAAAAGGAATCTACACTTCACTTGGTCTTACGTCTACGTGGGGG 19894110 >seq8 Length=44809562 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| |||||||| ||||| || ||||| || || ||| | ||| ||| || | Sbjct 30326659 ATGCAAATCTTTGTCAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 30326718 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| ||||| | || ||| || Sbjct 30326719 -GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 30326777 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || ||||||||||| ||||||| || || |||| |||||||| Sbjct 30326778 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 30326837 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || || || || || | ||| |||| Sbjct 30326838 CATCCAGAAGGAGTCGACTCTTCACTTGGT 30326867 >seq4 Length=32756842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||||||||| ||||| || |||| |||| | Sbjct 27091097 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACACTCGAGGTGGAGTCC 27091038 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||| |||||| | || |||| Sbjct 27091037 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGAT 27090978 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | || | || ||||||||||| || |||| | | || |||| || ||| Sbjct 27090977 CAGCAGCGTTTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGACTAC 27090918 Query 110450 AACATTCAAAAAG 110462 ||||| || |||| Sbjct 27090917 AACATCCAGAAAG 27090905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412828794814685