Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 183 5e-40 seq6 167 4e-35 seq3 111 2e-18 >seq8 Length=44809562 Score = 183 bits (202), Expect = 5e-40 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| || |||||| || ||| || ||||| ||||| ||| Sbjct 36833471 GCCTCGGAGACCTGGACGTCGGACATGAACCGAGAGGCGAGATTCTCGAGGACGATTCCG 36833530 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 36833531 TCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGA 36833590 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| | ||||||||| |||||||||||||| ||||||||| Sbjct 36833591 TTCTCCCAGTCGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCC 36833650 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| | |||| |||| ||||||| Sbjct 36833651 TCGGCCTTCTTGTACATCTCCCAGATCTGAGGGTATTGGATTGGGAACA 36833699 Score = 167 bits (184), Expect = 4e-35 Identities = 231/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| |||||| ||| | || |||||||| || |||||| Sbjct 36833147 CCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCAGGCATGAGCCCTCGCTTC 36833206 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| | ||||| || || ||||| || || || |||||| || ||| Sbjct 36833207 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCGACGCACGCGAAG 36833266 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || |||||||||||| | || || ||||||| |||| ||||| Sbjct 36833267 GCCACGATCCTCTCGGCAAAAGTCTGGGACCCATC------GATCCACGTCATGGCCCAT 36833320 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| ||| || |||| | || ||||| ||||| ||||| |||||| ||| Sbjct 36833321 TGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGGAAGAGATGGTCCCGCTCC 36833380 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| ||| ||||| | ||||| ||| |||| ||||||||||| ||| Sbjct 36833381 TTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTGTACATCTCGGAGTGGATGTTCTCG 36833440 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||||||||| || || ||| Sbjct 36833441 ATCGCGATCTGGAACCCGTAGAAG 36833464 Score = 105 bits (116), Expect = 1e-16 Identities = 205/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| |||||||| || |||| |||||||||||||||||||| ||||| || || Sbjct 36832858 CTCGAAGAAGTTGGTTTTCCCCTGAAGCGAGATCAACTCCATCCAATCAAACGGATTCGC 36832917 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 || ||| |||| || |||| |||| | | | || | || || || || || || Sbjct 36832918 CGCACCGTACACCTTCCCGTACCCAAGCGCCCCCAAAAGCCTATCCGCCACAAACTCGAT 36832977 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 ||||| | ||| | | |||||| || | | ||| ||| || |||| |||| | Sbjct 36832978 ATACTGACTCATCAAATCACGGTTCATCCCCACCAACGCGCAC-GGAAGCGCGTCGCACA 36833036 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 ||||||| |||||||||| ||||| ||| | |||| | || | || || || Sbjct 36833037 CAAACTCCCTCTCGATCTCCACGGCGTCGCACACGATC-GACTTCACGCGCTCCTCCGTG 36833095 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||| ||| | || | ||||||| |||||| || || ||||| ||||| ||| Sbjct 36833096 AGCTTCGTCCTC-AGGAGGGTGTAGATCAGGCACGCGAAATCGCAGTGCAGGCCT 36833149 >seq6 Length=32494073 Score = 167 bits (184), Expect = 4e-35 Identities = 177/233 (76%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || || || || |||||| || ||| |||||||| ||||| || Sbjct 29608895 GGCCTCGGAGACCTGCACGTCGGACATGAACCGAGAGGCGAGGTTCTCGAGGACGATCCC 29608954 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| |||| ||||| ||||| |||||||||| Sbjct 29608955 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGGCGCTCTCCGTCGCTGAG 29609014 Query 796269 CGAGACC---CAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 || |||| | | ||| | ||||||||| |||||||||||||| ||||| Sbjct 29609015 ATTTTCCTCCCAGTCGCGGGGGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGA 29609074 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 29609075 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACA 29609127 Score = 154 bits (170), Expect = 2e-31 Identities = 221/310 (71%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||| |||||| ||| ||| || |||||||| || |||||||| ||||| ||||| Sbjct 29608586 GATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCACGCTTCTTCAGCCAGAAGAT 29608645 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 | ||||| || || ||||| || || || || ||| ||||| | |||| || ||| Sbjct 29608646 CGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCAAGCAAACGCCACGATCCTCTC 29608705 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 |||||| | | || || || ||||||| ||| ||||| | ||||| ||| Sbjct 29608706 GGCAAAGGCCTG-AGATCC-----GTCGATCCACGTCAAGGCCCATTGGGCCTTCTTCGC 29608759 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGAC 794594 || |||| | ||| ||||| ||||| ||||| || ||| |||| ||||||| Sbjct 29608760 GACGCAGGGGATCGTCTCGATCGCGCGGAAGAGATGATCCCTCTCTCTATTATCCTTGAT 29608819 Query 794595 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAA 794654 ||| || || | ||||| ||| |||| ||||||||||| ||||| ||||||||||| Sbjct 29608820 GTAAGTATCTAACAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAA 29608879 Query 794655 GCCATAAAAG 794664 || || ||| Sbjct 29608880 CCCGTAGAAG 29608889 Score = 116 bits (128), Expect = 6e-20 Identities = 225/323 (70%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| ||| || || || | | |||||| ||||| || || |||| ||||||||| Sbjct 29608257 GCCTTCTGATAATCACCAACCCTCTTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAGATC 29608316 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGC 794017 ||||||||||| ||||| || ||| ||| |||| || |||| |||| || | Sbjct 29608317 AACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCC 29608376 Query 794018 AAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGAT 794077 || || | || || ||||| ||||| ||||| | ||| || | |||||| || | Sbjct 29608377 AA-CAACCTATCCGCCACGAACTCAATATACTGACTCATCAGTTCACGGTTCATCCCCAC 29608435 Query 794078 GAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGA 794136 | ||| |||||| |||| |||| |||||||| |||||||||| || || ||| | Sbjct 29608436 CAACGCGCACGGG-AGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACA 29608494 Query 794137 TGATCTGCCTGGGCACG---TCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGG 794192 |||| ||| |||| || ||| |||| ||| | || | | ||||| |||| Sbjct 29608495 CGATCGACCT---CACGCGCTCCTCCGAGAGCTTCGTCCTC-AGGAGGGAGTAGATCAGG 29608550 Query 794193 CAGGCAAAGTCGCAATGCAGACC 794215 || || |||||||| ||||| || Sbjct 29608551 CACGCGAAGTCGCAGTGCAGGCC 29608573 Score = 86.0 bits (94), Expect = 1e-10 Identities = 105/142 (74%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| || || ||||||||||| ||||| | ||||| || || ||||| ||| Sbjct 11620248 CCAGGCATGAGCCCTCGTTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAG 11620189 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || ||| || ||| ||| ||||| || ||| || || || | || | || Sbjct 11620188 ATCCCTTCGGCGCAGGCGAAGGCGACGCTCCTCTCCGCGAAGGTCT-GAG-----ATCTG 11620135 Query 794500 TTGATCCACTTCATCGCCCACT 794521 | ||||||| |||||||||||| Sbjct 11620134 TCGATCCACGTCATCGCCCACT 11620113 >seq3 Length=44396707 Score = 111 bits (122), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| || || || || ||||| | |||| || || ||| | Sbjct 38816206 TTGGTGACGGCCTTGGTCCCTTCAGAAACAGCGTGTTTCGCCAACTCTCCAGGCAACACG 38816147 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | ||| || ||||||||||| | || ||| ||| |||||| | ||| Sbjct 38816146 AGCCTCACAGCAGTCTGGATCTCCCTGGAAGTGATGGTGGGCTTCTTGTTGTACCTCGCG 38816087 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || | | |||||| | ||| |||| |||||||||| || |||||||||| Sbjct 38816086 AGCTTGGCAGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATC 38816027 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| |||| | ||||| || | ||||||||| |||||||| ||||||||| Sbjct 38816026 CCCATCGCTTTGCTCGAGATCCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 38815973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915975676742255