Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq1239 113 1e-20 >seq1239 Length=2566 Score = 113 bits (124), Expect = 1e-20 Identities = 284/431 (66%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 2100 TCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTC 2159 || || | |||| |||| || || | ||||| | || | || |||||||| |||||| Sbjct 2000 TCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTC 2059 Query 2160 GATCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTC 2219 ||| | || |||||||| | |||||| | |||| ||| ||||| Sbjct 2060 AGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTG 2119 Query 2220 GGGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAG 2279 ||||||||||| | || |||| ||| | || ||||| | |||||| || |||||| | Sbjct 2120 GGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTG 2179 Query 2280 TTGGTGCCGAGAAAAATCAGTTTTGC---------ACCGTTATTGCCCAGGACAATCGGG 2330 || || |||||| ||||| || |||| |||| || || || || Sbjct 2180 TTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGA 2239 Query 2331 TCACCGGTCAGGTCAACGTC-AACCA--GCCGGGCAAAGGCGATGATGTATTCGCGGAAC 2387 | |||| ||| || | || ||||| || ||| || |||| |||||| ||||||| Sbjct 2240 TTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGCGGAAC 2299 Query 2388 ACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 2447 || | | ||| | || || ||||| ||||||||||| | ||||| || ||| Sbjct 2300 ACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCG 2359 Query 2448 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATA 2507 || | ||| ||| || || || | ||| || |||||||| || ||||| ||| Sbjct 2360 TCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATA 2419 Query 2508 TCGCGGATGCG 2518 | |||||| || Sbjct 2420 TGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107484751511100