Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq8 96.9 3e-15 seq2 95.1 1e-14 seq5 91.5 1e-13 seq7 89.7 4e-13 >seq3 Length=44396707 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | || || || ||||| || | || |||| | Sbjct 19894108 ATGCAGATTTTCGTTAAGACACTGACCGGGAAGACCATCACTCTGGAGGTGGAGAGTTCA 19894049 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || |||||| || || |||||| | || || ||| Sbjct 19894048 GACACTATAGACAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 19893989 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||||| || |||| |||| || |||||| Sbjct 19893988 CAGAGACTCATCTTTGCCGGAAAGCAGCTAGAGGACGGCAGAACACTGGCTGATTACAAC 19893929 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| || ||||||||| | ||| |||| ||| Sbjct 19893928 ATTCAGAAAGAGTCTACGCTTCACTTGGTCTTG 19893896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || || ||||| | || |||| ||| Sbjct 19912156 ATGCAGATCTTTGTCAAGACGTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGCTC- 19912098 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| |||||| || ||||| || | || ||| || Sbjct 19912097 CGACACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCA 19912038 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||| ||||| | | ||| | || |||||||| Sbjct 19912037 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGAAGAACTCTTGCTGACTACAA 19911978 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| ||||||||||| | ||| |||| ||| Sbjct 19911977 CATTCAGAAGGAGTCTACTCTCCACTTGGTCTTG 19911944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| ||| |||| ||| ||| Sbjct 19912612 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTC- 19912554 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || || ||| | ||| |||||| Sbjct 19912553 CGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 19912494 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||||||||||| || ||| | || || ||||| Sbjct 19912493 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTCGCTGATTACAA 19912434 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 19912433 TATCCAGAAGGAGTCGAC 19912416 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||||| || || ||||||||||| | || |||| | Sbjct 19894336 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAAACCATTACTTTGGAGGTGGAGAGTTCA 19894277 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| ||||| || || | || || ||| Sbjct 19894276 GATACCATCGACAATGTTAAAGCCAAGATTCAGGATAAGGAGGGTATTCCTCCTGACCAG 19894217 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || || || || || | || | || ||||||||| Sbjct 19894216 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGTACTCTTGCTGACTACAAC 19894157 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 ||||||||||| ||||| | ||| |||| || Sbjct 19894156 ATTCAAAAGGAATCTACACTTCACTTGGTCTT 19894125 >seq8 Length=44809562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| ||||| |||||||| || || ||| | ||| ||| ||| Sbjct 30326659 ATGCAAATCTTTGTCAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 30326718 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | || ||| || Sbjct 30326719 -GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 30326777 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | || ||||||||||| ||||| | | || |||| || ||||| Sbjct 30326778 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 30326837 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 30326838 CATCCAGAAGGAGTCGACTCTTCACTTGGT 30326867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || || |||||||| ||| | || ||| ||| Sbjct 30325975 ATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCTTGGAGGTTGAGAGCTCA 30326034 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| |||||||| || | || |||||| Sbjct 30326035 -GACACCATAGACAATGTCAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCA 30326093 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||||||||| | || | || |||||||| Sbjct 30326094 GCAGAGGCTTATCTTTGCAGGTAAGCAGCTGGAGGATGGGCGCACGCTCGCTGACTACAA 30326153 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| ||||||||||| ||| Sbjct 30326154 CATCCAAAAGGAGTCCACG 30326172 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || |||||| | || ||||| ||||| || |||| ||| ||| Sbjct 30325519 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTC- 30325577 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| |||||||| || | || ||| || Sbjct 30325578 CGACACCATCGATAACGTCAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGACCA 30325637 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||| ||||| | | || | || |||||||| Sbjct 30325638 GCAGAGGCTCATCTTTGCCGGTAAGCAGCTCGAGGATGGAAGGACTCTTGCTGACTACAA 30325697 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 30325698 CATCCAAAAGGAGTCGAC 30325715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || |||||||| ||||| |||||||| ||||| ||| |||| || | ||| Sbjct 30325747 ATGCAGATCTTTGTCAAGACTTTGACAGGCAAGACCATCACCCTCGAGGTCGAAAGCTC- 30325805 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || |||||| | || ||| || Sbjct 30325806 CGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCA 30325865 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| ||||| | | || | || |||||||| Sbjct 30325866 GCAGAGGCTTATCTTCGCCGGGAAGCAGCTAGAGGATGGAAGGACTCTTGCTGACTACAA 30325925 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||| ||||| || Sbjct 30325926 CATCCAAAAAGAGTCGAC 30325943 >seq2 Length=44367670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | || || || ||||| ||| |||| ||| Sbjct 25764689 TTTCAGATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAA 25764630 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| || || ||| | | || ||| ||||| ||||| |||||| | || Sbjct 25764629 AGCTCT-GACACGATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCC 25764571 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| ||||| | || || || || |||| || | || || |||| || Sbjct 25764570 GGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAATTGGAAGATGGCAGGACCTTGGCTGA 25764511 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| || || |||||||||||| | ||| |||| Sbjct 25764510 CTACAATATCCAGAAGGAGTCTACGCTTCACTTGGT 25764475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| |||| || || || || ||| | || || | Sbjct 7315818 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 7315877 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| ||||| || || |||||| | || |||| Sbjct 7315878 TCAGACACGATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGAT 7315937 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| |||| || | || || || |||||||| |||| | || | || |||||| Sbjct 7315938 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACGCTTGCCGACTAC 7315997 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| ||| | ||| |||| Sbjct 7315998 AACATCCAGAAGGAGTCGACGCTTCACCTGGT 7316029 >seq5 Length=39062406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || ||| | || || || ||||| ||| |||| ||| ||| Sbjct 6897888 ATGCAAATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCT 6897947 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| || || ||||| | || ||||| Sbjct 6897948 -GACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 6898006 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | |||| |||| |||||||| Sbjct 6898007 GCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGAACATTGGCCGACTACAA 6898066 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| || || ||||||||| Sbjct 6898067 CATCCAGAAAGAGTCTACG 6898085 >seq7 Length=41685129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || | || |||||||| || ||| | || |||| ||| Sbjct 33846523 ATGCAGATCTTCGTTAAGACACTCACCGGCAAAACGATCACCCTTGAGGTGGAGAGCTC- 33846465 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| |||||| || || |||||| | || ||||| Sbjct 33846464 CGACACCATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCA 33846405 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| || ||| | || |||||||| Sbjct 33846404 GCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACTCTAGCTGACTACAA 33846345 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 33846344 CATCCAGAAGGAGTCGAC 33846327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864427963505