Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 seq3 141 7e-29 seq8 136 3e-27 seq5 134 1e-26 seq6 125 6e-24 seq1473 114 1e-20 seq7 102 6e-17 seq4 100 2e-16 >seq2 Length=44367670 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| ||||| ||||| || || || || || ||||| ||||| ||| Sbjct 25764001 CCTCCACGTAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCA 25764060 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| ||||| || | ||||| || ||||| ||||| ||| Sbjct 25764061 AGAGTACGTCCATCCTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGGGGA 25764120 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||||||||||||||| | || ||||||| | || | ||||| || || || Sbjct 25764121 ATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 25764180 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| || || || || ||||||||||| |||||||| Sbjct 25764181 TCCAAAGTGATAGTCTTTCCCGTCAATGTTTTAACAAAAATCTGCAT 25764227 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||||| ||||| || || || || |||||||| || || || | ||||||| | Sbjct 25763785 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTGCGACCA 25763844 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || ||||| | || | | ||||| || || ||||||||||||||| Sbjct 25763845 TCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCTTTG 25763904 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || |||||| | ||||| | |||| ||||| || || ||||| ||||| || Sbjct 25763905 TCCTG-AATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACTTCTAGAGTGAT 25763963 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||||||||||||| Sbjct 25763964 GGTCTTTCCTGTCAACGTCTTGACAAATATCTGCAT 25763999 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || |||| |||||||| || || || || ||||| || || || Sbjct 7316048 TCCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 7315989 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | || || || || || || || | |||| || ||||||||||| || Sbjct 7315988 AAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGTGG 7315929 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || ||||||| | || | ||||| || ||| || Sbjct 7315928 GATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCTGATGATTCGAC 7315869 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| ||||| ||||||||||| Sbjct 7315868 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 7315818 >seq3 Length=44396707 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| ||||| ||||| || || || || || ||||| ||||| |||| ||||||| Sbjct 19893665 ACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGACC 19893724 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | ||||| || ||||| ||||| |||||||||||||| Sbjct 19893725 ATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTT 19893784 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| || || ||||| ||||| || Sbjct 19893785 GTCCTGGATCTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCTAGAGTGAT 19893844 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || || || || |||||||| Sbjct 19893845 GGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 19893880 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| | |||||||||||| || || || || |||||||| ||||| || Sbjct 19911702 CCTCCACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGCC 19911761 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| ||||| ||||||||||| | || | | |||||| ||||| || Sbjct 19911762 AAGGTGCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGG 19911821 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || ||||| | ||| || || | || | |||||| || || || Sbjct 19911822 ATCCCCTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACC 19911881 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || | || |||||||| |||||||| Sbjct 19911882 TCTAGAGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCAT 19911928 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| ||||| || || || || || || |||||||| || || ||| Sbjct 19911930 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 19911989 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| ||||| || ||||| ||| | ||||| || ||||| ||||| ||| Sbjct 19911990 AGAGTTCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGA 19912049 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||||||||||||||| | ||| ||||||| | || | ||||| || || || Sbjct 19912050 ATACCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACC 19912109 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 19912110 TCCAAAGTAATAGTCTTTCCCGTCAACGTCTTGACAAAGATCTGCAT 19912156 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || ||||| ||||||||||| || || |||| || || ||| || Sbjct 19894128 ACCAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCAAGAGTACGCCCATCTTCA 19894187 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| || |||||| | ||||| || ||||| || || ||||||||||| || || || Sbjct 19894188 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATACCCTCCTTATCCTG- 19894246 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | ||| ||| | || | || || ||| || || || | ||| || ||||| Sbjct 19894247 AATCTTGGCTTTAACATTGTCGATGGTATCTGAACTCTCCACCTCCAAAGTAATGGTTTT 19894306 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| |||||||| Sbjct 19894307 TCCAGTCAAAGTCTTGACAAAGATCTGCAT 19894336 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || || || || || ||||| ||||| |||| || || Sbjct 21554268 ACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCC 21554327 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | ||||| || ||||| ||||| || ||||||||||| Sbjct 21554328 ATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 21554387 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | || || || || || || | ||| || Sbjct 21554388 GTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGAT 21554447 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||| || ||||| || ||||| Sbjct 21554448 AGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 21554483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| ||||||| |||||||| || | || || ||||| || || || Sbjct 23005713 TCCTCCTCTCAGACGGAGCACCAGGTGAAGCGTCGACTTCTTCTGGATGTTGTAGTCGGC 23005772 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | || | || || || | | | |||| || ||||| ||||| || Sbjct 23005773 GAGGGTCCTCCTGTCTTTCAGCTGCTTCTCGGTGAAGATCAGTCGCTGCTGGTCCGGTGG 23005832 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || |||||| | || | ||||| || ||| || Sbjct 23005833 GATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 23005892 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || |||| || || || |||| |||||| ||| | ||||||||||| Sbjct 23005893 CTCTAGGATTATCGTCTTTCCTGTTAGGGTTTTCACAGAGATCTGCATTTT 23005943 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || || || |||||||| || || |||| || | ||| || | || || || Sbjct 21554515 GTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCG 21554574 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | ||||| || ||||| ||||| ||||||||||| ||||| || | || ||| Sbjct 21554575 GCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGCTTTA 21554634 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 || | || | ||||||||| || || || | ||| ||||| || || || | || Sbjct 21554635 ACGTTATCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAGAGTC 21554694 Query 29770 TTAACAAATATCTGCAT 29786 || ||||| || ||||| Sbjct 21554695 TTGACAAAGATTTGCAT 21554711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || || ||||| ||||| || || || | || | ||| || ||||| || || Sbjct 19912188 GTCGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTTCTGCCATCTTCAAGTTGCTTTCCG 19912247 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || | || ||||||||||| || || ||||| || ||||| ||| || | || Sbjct 19912248 GCGAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTATCTTG-AATCTTAGCCTT 19912306 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 || | || | ||||||||| || |||||||| || || || || || || || || Sbjct 19912307 CACGTTATCAATGGTGTCAGAACTCTCCACTTCAAGGGTGATCGTCTTTCCGGTCAATGT 19912366 Query 29769 TTTAACAAATATCTGCAT 29786 || || ||||||||||| Sbjct 19912367 CTTGACGAATATCTGCAT 19912384 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| || || || || ||||| |||| ||| | ||| Sbjct 21554728 AGGACCAAGTGGAGAGTCGATTCCTTCTGGATATTGTAATCAGCAAGGGTCCTGCCATCT 21554787 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | || ||||||||||| ||||| ||||| || || Sbjct 21554788 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCC 21554847 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | ||||| || ||| || ||||| || || || Sbjct 21554848 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTC 21554907 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || || || | ||||| || || |||||||| | ||| Sbjct 21554908 TTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAA 21554945 >seq8 Length=44809562 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||| |||||||| || ||||||||||| |||||||||| ||||| Sbjct 30326418 ACGAAGCACAAGATGGAGCGTGGACTCCTTTTGAATGTTGTAATCCGCAAGAGTGCGTCC 30326359 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || |||||| | || | ||||||||| || || || || || || || Sbjct 30326358 ATCTTCGAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTT 30326299 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| |||||| | || | ||||| || || || || | ||| | Sbjct 30326298 GTCCTG-AATCTTTGCCTTGACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAAGTGA 30326240 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | ||| || ||||| |||||||| Sbjct 30326239 TGGTTTTACCGGTGAGGGTCTTGACAAAAATCTGCAT 30326203 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| ||||| | ||| |||||||| || ||||| ||||| || || || Sbjct 30326201 CCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCG 30326142 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || ||| | || | || ||||||||||| || Sbjct 30326141 AGCGTGCGCCCATCCTCCAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGATCCGGTGGG 30326082 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| || || | || |||||| | |||| ||||| || || || Sbjct 30326081 ATTCCCTCTTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACC 30326022 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || | ||| || ||||| || ||||| Sbjct 30326021 TCCAAGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 30325975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 29586 AAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTT 29645 ||| || || || ||||| |||||||||| |||| |||||| ||| |||||| |||| Sbjct 13500725 AAGTGTTGACTCCTTTTGGATGTTATAATATGCAAGCGTGCGACCATCGTCGAGTGGTTT 13500666 Query 29646 GCCAGCATATATC---AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| | | || | ||| || | | || || || || ||||||||||| ||| | Sbjct 13500665 ACCACAAAACGTCGTGATTCTCTGTCGGTTTGGTGGGATCCCTTCTTTGTCTTG-AATCT 13500607 Query 29703 TTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 |||| || ||| || ||| |||| || || ||||| | || || ||||| |||| Sbjct 13500606 TTGTCTTTACATCCTCAACAATGTCTGAGCTGTCAACTTCTAAGGTAATGGTTTTACCAG 13500547 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTTAAAACGTA 29797 | |||| |||||||| |||||| || |||||| Sbjct 13500546 AGAGTATTTTCACAAATATTTGCATTCTACAACGTA 13500511 >seq5 Length=39062406 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| |||||| ||||||||||| || ||||| || || || || || Sbjct 6898342 CCTCCACGCAGACGCAACACCAAGTGAAGCGTGGACTCCTTTTGGATATTGTAGTCAGCC 6898283 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || || || ||||| || | ||||| || ||||| ||||| || Sbjct 6898282 AAGGTACGACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 6898223 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||| | || ||||| | || | ||||| || || || Sbjct 6898222 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 6898163 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || ||||| || ||||| |||||||| Sbjct 6898162 TCTAGAGTGATTGTTTTTCCTGTCAAGGTCTTGACAAAGATCTGCAT 6898116 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || || || || || ||||| ||||| |||| || || Sbjct 24281642 ACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCC 24281583 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | ||||| || ||||| ||||| || ||||||||||| Sbjct 24281582 ATCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 24281523 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | || || || || || || | ||| || Sbjct 24281522 GTCTTGGATCTTGGCTTTGACGTTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGAT 24281463 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||| || ||||| || ||||| Sbjct 24281462 AGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCAT 24281427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| || || || || ||||| |||| ||| | ||| Sbjct 24281182 AGGACCAAGTGGAGAGTCGATTCCTTCTGGATATTGTAATCAGCAAGGGTCCTGCCATCT 24281123 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | || ||||||||||| ||||| ||||| || || Sbjct 24281122 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTATCC 24281063 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | ||||| || ||| || ||||| || || || Sbjct 24281062 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTC 24281003 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||| || | |||||| || || |||||||| | ||| Sbjct 24281002 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATCTGAAA 24280965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || || || || |||||||| || || |||| || | ||| || | || || || Sbjct 24281395 GTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCG 24281336 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | ||||| || ||||| ||||| ||||||||||| ||||| || | || ||| Sbjct 24281335 GCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGCTTTA 24281276 Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 || | || | ||||||||| || || || | ||| ||||| || || || | || Sbjct 24281275 ACGTTATCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAGAGTC 24281216 Query 29770 TTAACAAATATCTGCAT 29786 || ||||| || ||||| Sbjct 24281215 TTGACAAAGATTTGCAT 24281199 >seq6 Length=32494073 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| |||||| ||||| ||||| || ||||||||||| || || || Sbjct 11637463 CCTCCACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT 11637404 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| || || || || |||||||| | || | | |||||||||||| ||| Sbjct 11637403 AAGGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 11637344 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || |||||| | || | ||||| || || || Sbjct 11637343 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCCACC 11637284 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || ||||| | || || || || |||||||| Sbjct 11637283 TCTAGGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 11637237 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| || || || ||||| || || ||||| || || || | ||||||| Sbjct 7250929 ACGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACC 7250988 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| | || ||||||||||| | || | | ||||| ||||| ||||| ||||| || Sbjct 7250989 ATCCTAAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTT 7251048 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | |||||| | || | ||||| || ||||| || ||||| | Sbjct 7251049 GTCCTG-AATTTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCTACCTCTAGAGTGA 7251107 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | || || ||||| |||||||| Sbjct 7251108 TGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 7251144 >seq1473 Length=1387316 Score = 114 bits (126), Expect = 1e-20 Identities = 151/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 29586 AAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTT 29645 ||| || || || ||||| |||||||||| |||| ||||| ||| ||||||||||| Sbjct 1201389 AAGGGTCGACTCCTTTTGGATGTTATAATATGCAAGCCTGCGACCATCCTCGAGTTGTTT 1201448 Query 29646 GCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG 29705 ||| || | || | ||| || | | || || || || || |||||||| |||||||| Sbjct 1201449 ACCATCAAACATGATTCTCTGTAGGTTTGGGGGGATCCCTTCCTTGTCTTG-AATTTTTG 1201507 Query 29706 T-TTGACAGTTTCTACAGTGTCAGAAAGT-TCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 | || ||| | || ||| |||| ||| | || ||||| | || || ||||| || || Sbjct 1201508 TCTTTACATTCTCAACAATGTC-GAAGCTGTCAACTTCTAAGGTAATGGTTTTACCGGTG 1201566 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 || ||||| |||||||| |||||| Sbjct 1201567 AACGTTTTCACAAATATTTGCATT 1201590 >seq7 Length=41685129 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| || ||||||| |||||||| || || || || ||||| || || || Sbjct 26880630 TCCTCCTCTCAGGCGTAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 26880571 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || ||||| || || || || | |||| || ||||| || ||||| Sbjct 26880570 CAGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCTGGCGG 26880511 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || |||||| | || | ||||| || ||| || Sbjct 26880510 GATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 26880451 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || || | |||||| || || ||||||||||| Sbjct 26880450 CTCTAGGGTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATTTT 26880400 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||||| || || ||||| || ||||| || ||||||| ||| ||| ||| || Sbjct 22363516 ACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCAAGGGTTCGACCATCTTCA 22363575 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| ||||| |||||| || ||||||||||| || || ||||| ||||| ||| Sbjct 22363576 AGTTGTTTACCAGCGAATATCAGCCTCTGCTGATCCGGTGGTATTCCCTCCTTGTCCTGT 22363635 >seq4 Length=32756842 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || ||||| || || || | ||| || ||| ||||| ||||| || || | | Sbjct 27090905 CTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 27090964 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||| | ||||||||||| || || || || |||||||| | || ||||||| | | Sbjct 27090965 TCAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGT 27091024 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||| || || || || || || || || ||||| |||| |||||| || | Sbjct 27091025 CGATGGTGTCGGAGGACTCCACCTCGAGTGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 27091084 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 27091085 AGATCTGCATCTT 27091097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207251583845