Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq3 250 3e-61 seq4 156 5e-33 seq8 132 5e-26 >seq3 Length=44396707 Score = 250 bits (276), Expect = 3e-61 Identities = 431/623 (69%), Gaps = 5/623 (1%) Strand=Plus/Plus Query 159155 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 159214 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 159215 ACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTT 159274 ||| ||||| || |||||| || | || ||||| || || || ||||| | || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 159275 CCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGT 159334 | | ||||| | |||||||| || |||||| |||| || | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 159335 TGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAA-ATA 159393 ||| ||| | || || | || || ||| |||||| |||| | || || |||| || Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 159394 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGG 159453 |||| || |||| || ||||| | || || ||| | ||| ||||| | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 159454 AGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGT 159513 | || |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 159514 TTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGA 159573 |||| || || | ||| | || ||||||||||| ||||| || || | ||| || ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 159574 CATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTC 159633 | ||| || | ||||| ||| | || || |||| || | ||| | | Sbjct 24110326 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 24110385 Query 159634 AAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTC 159693 |||| || | ||||| |||||||| | | ||||||| |||||||| || || |||||| Sbjct 24110386 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTTT 24110444 Query 159694 TGAATGAAGGACTACGTGCTTGGTTGGCACCT---GCTGATCAACCCCATGAAAACTTCA 159750 | || ||||| | || ||||| |||| || | | | || || ||||||||| | | Sbjct 24110445 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 24110504 Query 159751 TCTTCCCAGAAGAAGTTCTACCA 159773 | ||| | || || ||| ||||| Sbjct 24110505 TATTCACTGAGGAGGTTTTACCA 24110527 >seq4 Length=32756842 Score = 156 bits (172), Expect = 5e-33 Identities = 196/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 ||||||| ||||| ||||||||| || | || | ||||| || | ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 || || || || | || || || | ||| || ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 157498 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTC 157557 || ||| || ||| ||||||||| || |||||||||||||| |||| |||| | || Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 157558 TTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 157617 || || || |||||||| ||||||||||| || || |||||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 157618 TTCGGTGGATCTTTGTTCTCTGCTATGCA 157646 ||||| || | | || ||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq8 Length=44809562 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 ||||| || |||||| || | |||| || || || ||| | || ||||| || Sbjct 31673107 ACTCCAGAAGGAGAACAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCT 31673048 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 || ||||| ||| | || | |||||||| ||||||||| ||||||| |||||| Sbjct 31673047 GAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCA 31672988 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| || Sbjct 31672987 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 31672928 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158407 || || | |||||| ||||| || |||| || ||||| || |||||| Sbjct 31672927 ATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 31672880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545256253483600