Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3 253 2e-62 seq4 170 2e-37 seq8 127 2e-24 seq6 123 3e-23 seq2413 113 5e-20 >seq3 Length=44396707 Score = 253 bits (280), Expect = 2e-62 Identities = 426/612 (70%), Gaps = 7/612 (1%) Strand=Plus/Plus Query 179336 CTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTT 179395 ||||||| ||||| || || ||| || ||||| || || ||||| || ||||| || Sbjct 24109923 CTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAATCTGATT 24109982 Query 179396 GGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAG 179455 ||||||||| ||| |||||||| ||||| || ||| ||||| | || || || |||| Sbjct 24109983 GGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAG 24110042 Query 179456 GTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTG 179515 | || || || ||| |||| || | ||||| || ||||| |||| ||| | ||||| | Sbjct 24110043 GGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAATTGCCGGTGTACTGGGCG 24110102 Query 179516 GTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTA--TGAAGATGG 179573 |||||| | | |||||| |||| | |||||||| |||| || || |||| |||| Sbjct 24110103 CGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATATTTTTTATCTGAAAATGG 24110161 Query 179574 AGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTAT 179633 || ||||| | ||| || || || | | |||| || || || ||||| || Sbjct 24110162 TGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAAT 24110221 Query 179634 GGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTG 179693 ||| || || ||||| |||||||| | ||||| |||| | | ||| |||||| | ||| Sbjct 24110222 GGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTG 24110281 Query 179694 GTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT 179753 ||| || ||||||| | | ||||| || || | ||| | || | | || ||| || Sbjct 24110282 GTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAAT 24110341 Query 179754 CATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGC 179813 | || |||||| | || || |||| |||| || | ||||| || | ||||| Sbjct 24110342 AGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGC 24110401 Query 179814 AGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACG 179873 |||||||| || || || || ||||| || || || |||||| | || ||||| | || Sbjct 24110402 GGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCG 24110460 Query 179874 TGCTTGGTTGGCACCT---GCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGT 179930 ||||| |||| || | | | || || ||||||||| | || ||| | || || || Sbjct 24110461 CACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGT 24110520 Query 179931 CCTACCTAGTGG 179942 |||| |||| Sbjct 24110521 TTTACCACGTGG 24110532 >seq4 Length=32756842 Score = 170 bits (188), Expect = 2e-37 Identities = 202/271 (75%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 ||||||| ||||| ||||||||| | | |||| ||||| || | ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || |||||||| | || || ||||| | |||| || | ||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGT-TTTCTTGATCTACCCAATTGGTCA 25315115 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || ||| ||||||||| || |||||||||||||| |||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 ||| ||||| || ||||| || ||||||||||| || |||||| | ||||| ||||| || Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCAT 178154 |||||| || | || || |||||||||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 >seq8 Length=44809562 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || |||||||| ||||| || || || | || ||||| || ||||||||| Sbjct 31673065 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 31673006 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 31673005 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 31672946 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | |||||| | | ||||| | || || || || Sbjct 31672945 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 31672886 Query 138718 TCCGATTGTATAATTGAAAC 138737 || ||| || ||||| || Sbjct 31672885 TCTGATGTTACCATTGAGAC 31672866 >seq6 Length=32494073 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || |||||||| |||||||| || || | || ||||| || ||||| ||| Sbjct 22685559 TACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 22685500 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | ||| || |||||| | || || | || || |||||||||||| | Sbjct 22685499 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGT 22685440 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| || | ||||||| || ||||| || Sbjct 22685439 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTACT 22685380 Query 138718 TCCGAT 138723 || ||| Sbjct 22685379 TCTGAT 22685374 >seq2413 Length=755821 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||| |||| || ||||| || ||||| || || || | || ||||| || ||||| ||| Sbjct 504594 TACGTCCTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 504535 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 | || || | |||||| |||||| | || ||| |||| || |||||||||||| | Sbjct 504534 TCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGT 504475 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||||||| ||||| | ||| ||| | | ||||| | || || || || Sbjct 504474 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCGTATCCTACT 504415 Query 138718 TCCGA 138722 || || Sbjct 504414 TCTGA 504410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605647932212200