Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1239 105 1e-18 >seq1239 Length=2566 Score = 105 bits (116), Expect = 1e-18 Identities = 256/381 (67%), Gaps = 20/381 (5%) Strand=Plus/Plus Query 3747 GGCGTGCTGAAGTAGGTCTTGCGCCACTTCTTGTGCATCGCCATGCCGCTGGCGACCTTG 3806 |||||| |||||||||| ||||||||| ||| ||||| ||||||| ||| | Sbjct 2042 GGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTC 2101 Query 3807 TTCAGCTGGTTGAAACCGTAGGTCCAGAAGAACTCGTCAAAGTAGAAATTGCCGTGGTAG 3866 | ||||| | |||| | | ||||||| | ||||| | ||||| | |||||||||| Sbjct 2102 TGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAG 2161 Query 3867 CCCTGTGCGGTGCGGGCGTTGGTGCCCAGGAAGAACAGCTCGGCGC------------CA 3914 | ||| || ||| | ||| || || || ||| || || | | Sbjct 2162 CTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCT 2221 Query 3915 TTGGCCAGGGTGATCGGGTCGCCGGTCAGGTCACGGTCCAGCACCTCACGCA-CGAA-GC 3972 ||| || | |||| || | ||||| ||| || || | | | | ||| |||| || Sbjct 2222 TTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAAC-CATTGCGCGGCGAACGC 2280 Query 3973 CCCGCATATAGCCGAGGAAGATGTGCG-CTTGGCTCTTGGAT-GCGCTCAGGAAAATCTG 4030 || || |||| | |||| | | | || ||| | || | ||| |||||||||||| Sbjct 2281 GACG-ATGTAGCTGCGGAACACTTCGGACTGGGCGC--GGCTCGCGGACAGGAAAATCTG 2337 Query 4031 GTTGCGGCCGGTGGTCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACC 4090 |||| ||||| || ||||| || | ||| ||| ||||||||||||||| || Sbjct 2338 GTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCC 2397 Query 4091 GATCTGGCGCGACTTCAGGAT 4111 ||||||||||||||||||||| Sbjct 2398 GATCTGGCGCGACTTCAGGAT 2418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107155161472230