Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1239 123 6e-24 >seq1239 Length=2566 Score = 123 bits (136), Expect = 6e-24 Identities = 734/1168 (63%), Gaps = 77/1168 (7%) Strand=Plus/Plus Query 8894 ATGGACATGAACGACGCGGCGAAGTCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTG 8953 || |||| ||||| ||| |||| || | ||| ||||| || | || | || |||| Sbjct 1301 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGATGCG---CTTG 1357 Query 8954 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACTTCCACGGAATAGGTG 9010 | ||||||||| || ||||||||||||||||| | ||| | |||| | || ||| Sbjct 1358 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 1416 Query 9011 AAGCCTTCGGCGT---CCGGGCG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 9065 || |||| || ||||| | ||| | | ||||||| ||||||| | | |||| Sbjct 1417 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 1472 Query 9066 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTTGTAGCGCTCAGTGACGCGCCGGATGG 9125 |||||| ||||||||| | || ||||||| ||||||| | | ||| Sbjct 1473 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCT 1532 Query 9126 CGCCGGCCTGTTCCTCGTA-GTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAAC 9184 ||||| | | | | | || | || || | |||| |||||| | |||||| Sbjct 1533 GCTTTGCCTGATGCGTGAACGACG-TCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAAC 1591 Query 9185 TTGCCGCCCGGCACCAGGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9244 |||||||||||| |||||||||| Sbjct 1592 TTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCGGGTTCGA 1651 Query 9245 NNNTTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGC 9304 ||||||| || |||| ||| ||||| |||||| ||||||||||||| | ||| Sbjct 1652 C---TGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGGG 1708 Query 9305 CGGAAGTCCTCCCATACTTCCCAGGT--GTCCACCATCCCGCGCATGAGCATCGAGAGCG 9362 | |||| ||||| |||| || | | || | | | || | || || ||| Sbjct 1709 TCGTAGTCAGTCCATA-GGCCCAAGTCGGAATAGCAGCGCTC-CAGGTCGGTCAAG-GCG 1765 Query 9363 GAAACACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTT 9422 || | | | | || |||||||||| |||||| | ||| | |||| || Sbjct 1766 --AATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTT 1823 Query 9423 CGCTGTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGT 9482 || |||||||||| ||| | || | |||||||||||||||||||||| | |||| Sbjct 1824 CGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGT 1883 Query 9483 CCTCTACCGTCACGATCTGGCGCCACTGACCGTCAGCGCA----GC----GCATGCCGTT 9534 | | | ||| | || || ||||||||| ||||| | ||| || ||||| | Sbjct 1884 CTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATCT 1943 Query 9535 GCGCAGCGCGGTGTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTT 9594 |||| ||| ||| |||| | | ||| | | ||| | ||||| | | Sbjct 1944 GCGCTTCGC----TGGGCCACG----GCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCG 1992 Query 9595 GAACAGTGCGCCGGACCAGAACGGGTAGGCCTCATGCG---ACAAGCTGGACGGCGTGGA 9651 |||| |||||| |||| |||| || |||| |||| | |||| |||||||| Sbjct 1993 GAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGA 2049 Query 9652 GAAGTACGTTTGCCGCCAGTGCTTG--TGGATCGCCATGCCGGACGCGACCTTGCGCAGT 9709 |||||| || | ||||| | ||| || ||||| || || ||| | |||| Sbjct 2050 GAAGTAGGTCAGGCGCCACT--TTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGC 2107 Query 9710 TCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGC 9769 | |||||| || | |||||| ||||||| ||| | || |||||||||||||||| Sbjct 2108 TTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGC 2167 Query 9770 GCGGTGCGGGCGTTGGTCCCGAGGAAGTACAGCGTCGCCC------------CGTTGGGC 9817 || ||| | ||| ||| ||| || ||| ||||| | ||| | Sbjct 2168 GCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTC 2227 Query 9818 AACACCATCGGGTCGCCCTTCAGCTCGACGCCGGCTGCGTCCTTCGCGAATTGGATGATG 9877 || | || || | ||| |||||||| || | | ||||| || |||| Sbjct 2228 AAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATG 2287 Query 9878 TA-CTGCTTGAAGACGTGCGCCTGTGCCTTGCTGGCCGATAGAAAAATCTGGTTGCGGCC 9936 || |||| ||| || | | ||| || ||| || || || |||||||||||| || Sbjct 2288 TAGCTGC-GGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCC 2346 Query 9937 AGTGGTCAGC---GCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTG 9993 ||||||| ||||| |||||||| ||| |||||||| | ||| |||||||| Sbjct 2347 ---GGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTG 2403 Query 9994 CCGGCTCTTGAGCAGGTTGCGGATGCGC 10021 || ||| || | | |||||| ||| Sbjct 2404 GCGCGACTTCAGGATATGGCGGATCCGC 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127880935081560