Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq4 179 1e-40 >seq4 Length=32756842 Score = 179 bits (198), Expect = 1e-40 Identities = 213/285 (75%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| |||| || || ||||||||||| | | || || || | | ||||||| ||| Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||| | |||||| | ||| || ||||| | ||||||| |||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGT-TTTCTTGATCTACCCAATTGGTC 25315116 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || || ||| ||||||| | || ||||| ||||| ||||||| ||| | | Sbjct 25315115 AAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTG 25315056 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 |||| ||||| || || |||||||| |||||||| || |||||| | ||||| ||||||| Sbjct 25315055 TATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 25314996 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 ||||||| || | ||||| ||||| ||||| |||| |||| || Sbjct 25314995 TATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTC-CTTGGTA 25314952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824302114610