Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4 147 6e-31 >seq4 Length=32756842 Score = 147 bits (162), Expect = 6e-31 Identities = 202/281 (72%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||| |||| || || ||||||||||| | | || || || | | |||||| ||| Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||||| | || ||| | ||| |||||| | |||||||| | ||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||| |||| | | |||||| | || || || || || ||||||| ||| | || Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 || ||||| || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 ||||| |||| ||||||||||| ||||| |||| |||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTC-CTTG 25314955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661167490570