Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4 170 5e-38 >seq4 Length=32756842 Score = 170 bits (188), Expect = 5e-38 Identities = 209/284 (74%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||| |||| || || ||||||||||| | | || || || || | ||||||| ||| Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||| ||||||| | ||| || ||| | |||| ||| ||||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| ||| | | ||||||| | || || |||||| ||||||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 ||| || ||||| || ||||| || |||||||| || |||||| | ||||| |||||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 19290 GTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333 |||||||| | ||||||||||| ||||| |||| |||| || Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTC-CTTGGTA 25314952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141144534218610