Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq6 96.9 3e-15 seq2 91.5 1e-13 seq5 86.0 6e-12 seq3 86.0 6e-12 >seq4 Length=32756842 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || ||||||||||| || |||||| |||||||||||||||||||| ||| Sbjct 27090905 CTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 27090964 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | |||||| ||||| ||||| |||||||| || || || || ||| | | | Sbjct 27090965 TCAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGT 27091024 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || |||| | |||||| |||| || | || || || || || ||||| | || Sbjct 27091025 CGATGGTGTCGGAGGACTCCACCTCGAGTGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 27091084 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 27091085 AGATCTGCAT 27091094 >seq6 Length=32494073 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| || | ||||| || | | |||||||||| || ||||||||||| ||| | || Sbjct 11637686 ACGCAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCT-AAGG 11637628 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || ||| |||||||| || || | |||| |||||||| || || ||||| |||| Sbjct 11637627 TGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGC 11637568 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||| ||||| || || || | | || | ||| |||| |||||| || | Sbjct 11637567 CTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATAGTGTCGGAGCTCTCCACCTCCA 11637508 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| | || || || || ||||| || | || ||||||||| || Sbjct 11637507 GCGTGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCATGCCT 11637461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| ||||| ||||| || | | ||||| ||||||||||||||||| ||| | || Sbjct 11637458 ACGCAGACGCAACACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCT-AAGG 11637400 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || ||||| ||||| || || | |||| ||||| || ||||| ||||| |||| Sbjct 11637399 TGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATGC 11637340 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||| ||||| || || ||| | | || | || |||| |||||| || | Sbjct 11637339 CTTCCTTATCCTGGATCTTAGCTTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCTA 11637280 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| || || || | ||| |||||||| Sbjct 11637279 GGGTTATAGTCTTCCCAGTGAGTGTCTTGACGAAGATCTGCAT 11637237 >seq2 Length=44367670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || |||||||||||||| || ||| || | Sbjct 25763785 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTGCGACCA 25763844 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | |||| |||||||| || |||||||| || || ||||| Sbjct 25763845 TCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCTTTG 25763904 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | || | || |||| ||||||||| | || | Sbjct 25763905 TCCTGAATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCCACTTCTAGAGTGATG 25763964 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| || || | || |||||||| Sbjct 25763965 GTCTTTCCTGTCAACGTCTTGACAAATATCTGCAT 25763999 >seq5 Length=39062406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || |||||||| || |||||| ||| |||||||| || || | Sbjct 24281848 GACTCCTTCTGGATATTGTAGTCAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCAGCG 24281789 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| || || || || |||| Sbjct 24281788 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACG 24281729 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||||||||| | || | ||| || || |||| || || Sbjct 24281728 TTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGTGATCGTCTTTCCTGTCAAGGTCTTC 24281669 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 24281668 ACAAAAATCTGCATG 24281654 >seq3 Length=44396707 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || |||||||| || |||||| ||| |||||||| || || | Sbjct 21554062 GACTCCTTCTGGATATTGTAGTCAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCAGCG 21554121 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| || || || || |||| Sbjct 21554122 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACG 21554181 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||||||||| | || | ||| || || |||| || || Sbjct 21554182 TTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGTGATCGTCTTTCCTGTCAAGGTCTTC 21554241 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 21554242 ACAAAAATCTGCATG 21554256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| ||||| || | | ||||||| || || ||||||||||| ||| | ||| || Sbjct 19911486 CGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT-AAGGTGCGACC 19911544 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| || || | |||| |||||||| || |||||||| || ||||| || Sbjct 19911545 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 19911604 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | || | || || | |||||| || | || | Sbjct 19911605 GTCTTGGATCTTGGCCTTCACGTTATCAATGGTGTCCGAGCTCTCCACCTCCAGTGTGAT 19911664 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||||||||| || || | ||| || |||||| || Sbjct 19911665 GGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATGCCT 19911704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || || |||||||| | ||||||| || ||||||||||| || || ||| Sbjct 19911707 ACGCAGACGTAACACCAAATGAAGAGTTGACTCCTTCTGAATGTTGTAATCTGCCAAGGT 19911766 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| ||||||||||| || | |||| ||||| || || || || || || || Sbjct 19911767 GCGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCC 19911826 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||||| |||| | || | ||| |||| |||||| || | Sbjct 19911827 CTCCTTATCTTGGATTTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACCTCTAG 19911886 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || || || || || | || ||||||||| || Sbjct 19911887 AGTGATGGTCTTCCCGGTAAGTGTCTTAACAAAGATCTGCATGCCT 19911932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596037806200