Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 >seq8 Length=44809562 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/306 (68%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||| |||||| | | || ||||| || ||||| | | || | ||| || || Sbjct 4273101 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCA 4273042 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || ||| | ||| || || | |||| |||| || || ||||| || ||||| Sbjct 4273041 GGAACAAGATCACACACATGAGCTAGCATGCAGGTAAGAAGAGAGTAAGAAGCAATGTTA 4272982 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || |||||||| ||| | || | ||| |||| || || ||||||||||| Sbjct 4272981 AACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCT 4272922 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || ||||| || ||||| | |||||||| || || |||||||| || || Sbjct 4272921 TCCGCCACATAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCATCAACTTGAGATCA 4272862 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTC 147218 | |||||||| ||||| | | | |||| | || || || || |||| |||| ||| Sbjct 4272861 GAAGGGTTCCAAGCCGATAGTATGATACGCC-GATCATCAGGATTGTTCTTGATCTTTTC 4272803 Query 147219 GATAAC 147224 ||| || Sbjct 4272802 GATTAC 4272797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469437788000