Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 320 2e-81 seq6 293 3e-73 >seq8 Length=44809562 Score = 320 bits (354), Expect = 2e-81 Identities = 387/521 (74%), Gaps = 8/521 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| || ||||||||||||||||| Sbjct 36833699 TGTTCCCAATCCAATACCCTCAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCCTTC 36833641 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 |||||||||||||| ||||||||| | ||||| | |||||| | || | |||| Sbjct 36833640 TGGACCGCCGAGGAAGTCGACCTCTCCCAGGACACACGCGACTGGGAGAATCTCAACGAC 36833581 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | |||||||| |||||||| |||||||||||||| || ||||||| ||| || ||||| Sbjct 36833580 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGAATCGT 36833522 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 |||||| || ||| || || ||| || ||||| | | ||||| || || Sbjct 36833521 CCTCGAGAATCTCGCCTCTCGGTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGCGCCTT 36833462 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||||||||||||||| ||||| ||||||||||| || | ||| |||||| | || Sbjct 36833461 CTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTGTTAGA 36833402 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||| ||| |||||||| ||| |||||| ||||| ||||| ||||| || | || Sbjct 36833401 CACGTACATCAAGGACAACAAGGAGCGGGACCATCTCTTCCGCGCGATCGAGACCATCCC 36833342 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| |||||| | ||||| |||| ||||||| | || || ||| Sbjct 36833341 CTGCGTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGA----TGGGTCCCAGAC-T 36833287 Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTC 1456231 ||||||||| || |||| | ||| || ||||||| || || || ||||| || || ||| Sbjct 36833286 TTTGCCGAGAGGATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCTCCGGTAGCTTC 36833227 Query 1456232 TGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| | ||||| ||||| |||||||| || |||||||| || Sbjct 36833226 TGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGG 36833186 Score = 95.1 bits (104), Expect = 2e-13 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| ||||| |||||||||| |||||||| |||| |||| ||| ||| | | || Sbjct 36833065 CGACGCCGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGG 36833006 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 |||||| | | ||| | ||||| || || ||| || || || | || | | | Sbjct 36833005 GATGAAC-CGTGATTTGATGAGTCAGTATATCGAGTTT-GTGGCGGATAGGCTTTTGGGG 36832948 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 ||||| || | ||| |||| ||| | |||| || ||||| |||||||||||||| Sbjct 36832947 GCGCTTGGGTACGG-GAAGGTGTACGGTGCGGCGAATCCGTTTGATTGGATGGAGTTGAT 36832889 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||| || |||||||| |||||| Sbjct 36832888 CTCGCTTCAGGGGAAAACCAACTTCTTCGAG 36832858 >seq6 Length=32494073 Score = 293 bits (324), Expect = 3e-73 Identities = 384/527 (73%), Gaps = 11/527 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| |||||||| Sbjct 29609127 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTC 29609069 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||||||||| ||||||||| | ||| | | |||||| | || ||| Sbjct 29609068 TGGACCGCCGAGGAAGTCGACCTCTCCCAAGACCCCCGCGACTGGGAGGAAAATCTCAGC 29609009 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| |||||||| ||| |||| |||||||||||||| || ||||||| ||| || || Sbjct 29609008 GACGGAGAGCGCCACTTCGTCAAACACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGGAT 29608950 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||||||| ||| || || ||| || || || | | ||||| || Sbjct 29608949 CGTCCTCGAGAACCTCGCCTCTCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCCCGCGC 29608890 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||||||||||||||| ||||| ||||||||||| || | ||| |||||| | Sbjct 29608889 CTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTT 29608830 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || || ||| ||||||| |||| ||| || ||||| ||||| ||||| ||| | Sbjct 29608829 AGATACTTACATCAAGGATAATAGAGAGAGGGATCATCTCTTCCGCGCGATCGAGACGAT 29608770 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| |||||| | ||||| ||| ||||||| || || ||| Sbjct 29608769 CCCCTGCGTCGCGAAGAAGGCCCAATGGGCCTTGACGTGGATCGAC-----GGATCTCAG 29608715 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 |||||||||| || |||| | ||||| |||| || || || || ||||| || || Sbjct 29608714 GCCTTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGC 29608655 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| | ||||| ||||| |||||||| || |||||||| || || Sbjct 29608654 TTCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCT 29608608 Score = 95.1 bits (104), Expect = 2e-13 Identities = 108/141 (77%), Gaps = 8/141 (6%) Strand=Plus/Plus Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||||||| ||||||| ||| | ||| ||| ||| || ||| || ||||| | Sbjct 11620115 TGGGCGATGACGTGGATCGACA-----GATCTCAGAC-CTTCGCGGAGAGGAGCGTCGCC 11620168 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 || ||| ||| ||| || ||||| ||||| || || |||||| | ||||| ||||||||| Sbjct 11620169 TTCGCCTGCGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAG 11620228 Query 1456253 AAGCGCGGCCTCATGCCCGGT 1456273 || || || |||||||| ||| Sbjct 11620229 AAACGAGGGCTCATGCCTGGT 11620249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177565730072290