Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq3 304 1e-77 seq4 172 6e-38 seq8 136 5e-27 >seq3 Length=44396707 Score = 304 bits (336), Expect = 1e-77 Identities = 446/625 (71%), Gaps = 11/625 (2%) Strand=Plus/Plus Query 159759 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCC 159818 |||| | || | ||||||||||| |||||||||||||| || || || || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 159819 ACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT- 159877 ||| ||||| ||| |||||||||| |||||||| || ||||| || || ||| ||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 159878 --TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 159935 |||| || |||| ||||||| || || ||| | || || | || ||| || |||| Sbjct 24110026 CATCCTCTTTTTCC--AAGGGTTT-CATAATTGGGCACTGAATTCATTTCATTTGCTGGG 24110082 Query 159936 AGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGA- 159994 | |||| ||| |||| || | || ||||| || || || |||||||||||||||| | Sbjct 24110083 AATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAAT 24110142 Query 159995 ACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 | || | |||| |||| || ||||| | ||| || ||| | || | ||||| Sbjct 24110143 ATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAG 24110202 Query 160055 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTG 160114 ||||| |||||||| |||||||| || |||||||| ||||| | ||||| || | || Sbjct 24110203 CCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTG 24110262 Query 160115 CATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTAT 160174 | ||||| || || | ||| | || || || ||||| ||||| || || | ||| || Sbjct 24110263 CTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAA 24110322 Query 160175 GGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGA 160234 ||| || ||| || | ||||| ||||| ||||| |||| || | ||| | Sbjct 24110323 GGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTT 24110382 Query 160235 GTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCC 160294 || || ||| | ||||| |||||||| | | |||| || |||||||| || || || | Sbjct 24110383 CCCAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTC 24110441 Query 160295 TATTGAATGAAGGACTTCGTGCTTGGATGGCACCT---GCTGATCAACCACATGAAAACT 160351 | || || ||||| |||| |||||||||| || | | | || || ||||||||| Sbjct 24110442 TTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACA 24110501 Query 160352 TTATCTTCCCTGAGGAAGTACTACC 160376 |||| ||| ||||||| || |||| Sbjct 24110502 TTATATTCACTGAGGAGGTTTTACC 24110526 >seq4 Length=32756842 Score = 172 bits (190), Expect = 6e-38 Identities = 200/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 ||||||| ||||| |||||||| || | || | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| ||| | || || | | ||| || ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 || ||||| || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 ||||| || | || || |||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 >seq8 Length=44809562 Score = 136 bits (150), Expect = 5e-27 Identities = 184/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 159571 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 159630 || || |||||| || | | | |||||| | | ||| |||| |||||| | ||| Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 159631 GGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGT 159690 || || || || ||||| ||||| || || || ||| | ||||||||||||||| || Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 159691 GCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTAT 159749 || ||| | | |||||||||||| | | |||||||| ||||||| ||| ||| | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCT-GTTCAATT 15118034 Query 159750 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCT 159809 || ||||| ||||| |||| |||| ||||| |||| ||||||||| ||| || || Sbjct 15118035 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 15118094 Query 159810 TATCTATCCACTGG 159823 || ||||| |||| Sbjct 15118095 AATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573005770674000