Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq3 212 7e-50 seq4 152 6e-32 seq8 109 6e-19 seq2413 87.8 2e-12 seq6 86.0 7e-12 >seq3 Length=44396707 Score = 212 bits (234), Expect = 7e-50 Identities = 434/642 (68%), Gaps = 5/642 (1%) Strand=Plus/Plus Query 162068 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCC 162127 |||| | || | ||||||||||| |||||||||||||| ||||| || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 162128 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 162187 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 162188 CCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGT 162247 | | | ||| | ||||| || ||||| ||| | ||||| | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 162248 TGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAA-ATA 162306 ||| ||| |||| || | || || ||| |||||| | || | || || |||| || Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 162307 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGG 162366 |||| || |||| || ||||| | || || ||| | | | || | | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 162367 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGT 162426 |||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| | Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 162427 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 162486 |||| || || | ||| | || || || ||||| ||||| || || | ||| || ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 162487 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTC 162546 || ||| || | ||||| ||| | ||||| |||| || | ||| | | Sbjct 24110326 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 24110385 Query 162547 AGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGC 162606 | || || | ||||| |||||||| || ||||||| ||||||||||| || ||||| Sbjct 24110386 AAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTTT 24110444 Query 162607 TCAATGAAGGACTACGTGCATGGTTAGCACCT---GCCGACCAACCCCATGAGAACTTTA 162663 | || ||||| | || | ||| | || || | | || || ||||| ||| ||| Sbjct 24110445 TAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTA 24110504 Query 162664 TCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 | ||| | || || ||| | || | || | | | ||||||| Sbjct 24110505 TATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 24110546 >seq4 Length=32756842 Score = 152 bits (168), Expect = 6e-32 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 ||||||| ||||| ||||||||| | | || | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| ||| | || || | |||||| ||| | | || || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 160526 || ||||| || ||||| || |||||||| || || |||||| | || || ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 160527 TTCGGTGGATCTTTGTTCTCTGCTATGCA 160555 ||||| || | | || ||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 >seq8 Length=44809562 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||||||| ||||||| ||||||||||||| || | || || | || Sbjct 31673023 TACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTT 31672964 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| |||||| || | || Sbjct 31672963 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACT 31672904 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 31672903 TGTGCGGCTTATCCTACT 31672886 >seq2413 Length=755821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| | ||||| |||||| |||||| || | || || | || Sbjct 504552 TACTCTTGCCGTGCCGGTTCCTGCTCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTT 504493 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACA 161287 ||||||||||||||| ||| | |||||||||||||||| || || || | || Sbjct 504492 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACT 504433 Query 161288 TGTGTTGCATATCCTACT 161305 |||| || ||||||||| Sbjct 504432 TGTGCGGCGTATCCTACT 504415 >seq6 Length=32494073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 161168 TATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTA 161227 || ||||| ||||| ||| ||||||| ||| ||||||||| || | || || | || Sbjct 22685517 TACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTT 22685458 Query 161228 GACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTG 161267 ||||||||||||||| ||| | |||||||||||||||| Sbjct 22685457 GACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTG 22685418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559486200779000