Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq3 230 3e-55 seq4 168 8e-37 seq8 91.5 2e-13 >seq3 Length=44396707 Score = 230 bits (254), Expect = 3e-55 Identities = 431/626 (69%), Gaps = 13/626 (2%) Strand=Plus/Plus Query 182741 CAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCC 182800 |||| | || | || |||||||| |||||||| || || || || || || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 182801 TTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTT 182860 | || || || |||||| || | ||| |||||||| ||||| || || | || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 182861 C---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGG 182917 | || || |||| |||||||| | || ||| |||| || | || ||| || |||| Sbjct 24110026 CATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGGCACTGAATTCATTTCATTTGCTGGG 24110082 Query 182918 AGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAA 182977 | |||| ||| ||||||| | || ||| | | ||||| |||||| || ||||| || Sbjct 24110083 AATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AA 24110141 Query 182978 TACCTTGTAT--GAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAG 183035 || || ||| ||| |||| || ||||| | ||| || || | | | ||| Sbjct 24110142 TATTTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAA 24110201 Query 183036 GAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTT 183095 | || || || ||||| ||||| || || || || |||||||||| |||||| |||| | Sbjct 24110202 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCT 24110261 Query 183096 GCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTT 183155 || ||| |||||| | |||||| || ||||||||||| ||||| || || | ||| | Sbjct 24110262 GCTTTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTA 24110321 Query 183156 TGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTG 183215 || | | || ||| || | || || ||| | || || |||| |||| || | Sbjct 24110322 AGGATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATT 24110381 Query 183216 AGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATC 183275 ||||| ||| | ||||| |||||||| || || || || |||||||| || || || Sbjct 24110382 TCCCAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATT 24110440 Query 183276 CTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGAT---CAACCACATGAAAAC 183332 ||| | || ||||| | || ||||| |||| || ||| || || ||||||||| Sbjct 24110441 CTTTTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAAC 24110500 Query 183333 TTCATCTTCCCTGAAGAAGTTCTACC 183358 | || ||| |||| || ||| |||| Sbjct 24110501 ATTATATTCACTGAGGAGGTTTTACC 24110526 >seq4 Length=32756842 Score = 168 bits (186), Expect = 8e-37 Identities = 206/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 || |||| ||||| |||||||| || | | | ||||| || | ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || ||| | || ||| | |||||| ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 181428 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 181487 || ||| ||| | | ||||| || || ||||||||||| ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 || ||||| |||||||||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 181588 || || || | || || ||||| ||||| |||| ||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq8 Length=44809562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 182553 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 182612 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 182613 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGT 182672 || |||| || ||||| ||||| || || | ||| ||| || ||||||||| || Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 182673 GCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAAT 182731 || ||| | | || ||||| ||| | |||||||||||||||| ||| || | | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTG-TTCAATT 15118034 Query 182732 CAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCT 182791 ||||||| ||||| |||| || | ||||| |||| ||| || || || || || Sbjct 15118035 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 15118094 Query 182792 CATCTATCCTTTGG 182805 || |||||| ||| Sbjct 15118095 AATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614598047477600