Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3 223 5e-53 >seq3 Length=44396707 Score = 223 bits (246), Expect = 5e-53 Identities = 418/611 (68%), Gaps = 5/611 (1%) Strand=Plus/Plus Query 176242 CATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAAT 176301 ||||| |||||| || ||||| ||||| || ||||| | || ||||||||||||| Sbjct 24109917 CATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCCACTAGGTCAAT 24109976 Query 176302 CTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTC 176361 || |||||||||| || |||||||| || || || ||| ||||| | | ||| Sbjct 24109977 CTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTT 24110036 Query 176362 TTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 176421 | || || || || || ||| ||||||| | || ||| || ||||| |||| ||| ||| Sbjct 24110037 TCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAATTGCCGGTGTAC 24110096 Query 176422 TAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA-ATACCCTATATGAA 176480 | || | || || ||| || || |||| | |||||| |||| || ||| |||| Sbjct 24110097 TGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATTTTTTATCTGAA 24110156 Query 176481 GATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTAT 176540 |||| || || | || ||| || | | | || | ||||| || ||| Sbjct 24110157 AATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTAT 24110216 Query 176541 TCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAG 176600 || ||||| || || |||||||| ||||| | |||||| |||| ||| ||| ||||| Sbjct 24110217 TCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAA 24110276 Query 176601 CGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATT 176660 | |||| | || ||||||||||| ||||| || || | ||| | || | | || Sbjct 24110277 CATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTT 24110336 Query 176661 GGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGA 176720 | || | || || ||| | || || |||| |||| || | |||||| ||| | Sbjct 24110337 GTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGT 24110396 Query 176721 GCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGA 176780 ||||| |||||||| || |||||||||||||||| || || || ||| | |||||||| Sbjct 24110397 GCAGCGGAAGATCCGGA-CTTGAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGT 24110455 Query 176781 CTAAGAGCATGGATGGCACCTGTGGAT---CAACCACATGAGTCATTTGTATTCCCAGAA 176837 | | | |||||||| || |||| || || ||||| || ||||| | || Sbjct 24110456 ATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAG 24110515 Query 176838 GAAGTTCTACC 176848 || ||| |||| Sbjct 24110516 GAGGTTTTACC 24110526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729906379114600