Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq4 168 8e-37 seq8 104 3e-17 seq6 89.7 6e-13 >seq4 Length=32756842 Score = 168 bits (186), Expect = 8e-37 Identities = 206/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 || |||| ||||| ||||||||| | | || | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||| | || ||| | || || ||| || |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||||| | | ||||| || || ||||||||||| ||||||| ||| |||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 || ||||| || ||||||||||| |||||||| || |||||||| ||||| || |||||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 178456 ||||| || | || || ||||| ||||| |||| ||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGT 25314953 >seq8 Length=44809562 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||||||||| ||||| || | || | ||||||||| ||||||||| ||| Sbjct 31673061 TCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTT 31673002 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || ||||| || ||| | | | ||| |||||||| ||| ||| ||| ||||| Sbjct 31673001 GCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 31672942 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || || |||| ||||| | ||||||||||| || Sbjct 31672941 TCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTG 31672882 Query 176530 AT 176531 || Sbjct 31672881 AT 31672880 Score = 86.0 bits (94), Expect = 8e-12 Identities = 173/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 179415 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 179474 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 179475 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGT 179534 || |||| || ||||| ||||| || || | ||| ||| || ||||||||| || Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 179535 GCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTAT 179593 || ||| | | || ||||| ||| | |||||||||||||||| ||| || | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTG-TTCAATT 15118034 Query 179594 CAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCT 179653 ||||||| ||||| |||| || | ||||| |||| ||| || || || || || Sbjct 15118035 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 15118094 Query 179654 CATCTATCCTTTGG 179667 || |||||| ||| Sbjct 15118095 AATTTATCCTCTGG 15118108 >seq6 Length=32494073 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||||||||| |||||||| | || | ||||||||| ||||| ||| ||| Sbjct 22685555 TCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTT 22685496 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 | || || || || ||| | | | ||| || ||||| ||| ||| ||| ||||| Sbjct 22685495 GCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGTTTCC 22685436 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTACTAGTG 176529 | |||||||| || |||| || ||| | || ||||||| | || |||||| || Sbjct 22685435 TCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTACTTCTG 22685376 Query 176530 AT 176531 || Sbjct 22685375 AT 22685374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605990321319600