Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq3 183 3e-41 seq4 163 3e-35 seq8 95.1 1e-14 seq2413 86.0 7e-12 seq6 84.2 2e-11 >seq3 Length=44396707 Score = 183 bits (202), Expect = 3e-41 Identities = 429/643 (67%), Gaps = 7/643 (1%) Strand=Plus/Plus Query 160279 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCC 160338 |||| | || | ||||||||||| |||||||| ||||| || || || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 160339 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 160398 | | ||||| || |||||| || | || ||||| || || || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 160399 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGT 160458 | | | || | ||||| ||||| || ||| | || || | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 160459 TGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACAC 160518 ||| ||| |||| || | || ||| | | || || |||| | ||||||||| || | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 160519 ACTGTA--TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 160576 | || |||| |||| || ||||||| || || ||| | | | || | Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160696 ||||| || || | ||| | || || || ||||| ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 160697 ACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 160756 | | ||| || | ||||| ||| | || || |||| || | ||| | Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 160757 CAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTA 160816 ||||| ||| | ||||| |||||||| | | |||| || |||||||| || || || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 160817 CTGAATGAAGGACTACGTGCATGGTTAGCACCT---GCCGACCAACCCCATGAGAACTTT 160873 | || ||||| | || | ||| | || || | | || || ||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 160874 ATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || ||| | || || ||| | || | || | | | ||||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAAT 24110546 >seq4 Length=32756842 Score = 163 bits (180), Expect = 3e-35 Identities = 198/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 ||||||| ||||| ||||||||| | | | | ||||| || | ||||| ||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 |||||||| || | || || | |||||| ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158885 || ||| || ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 158886 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158945 || ||||| || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 158946 TTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 ||||| || | || || |||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 >seq8 Length=44809562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||||||||||||||| || | || || || || || ||||||||| |||| | Sbjct 31673056 GACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCC 31672997 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 31672996 AGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 31672937 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | ||||||||||| |||||||||||| | || ||||| || || || Sbjct 31672936 GATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTT 31672877 Query 159735 ACTAT 159739 || || Sbjct 31672876 ACCAT 31672872 >seq2413 Length=755821 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 |||||||| |||||||| || | || || || || || ||||| ||| | || Sbjct 504585 GACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCCTGCTCG 504526 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| ||| | ||| | |||||||| |||||| |||| | || Sbjct 504525 AGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGAT 504466 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||| ||| |||||||||||| | || ||||| || ||||| Sbjct 504465 GATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCGTATCCTACTTCTGACGTT 504406 Query 159735 ACTAT 159739 || || Sbjct 504405 ACCAT 504401 >seq6 Length=32494073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 |||||||||||||||||||| | || || || || || ||||| ||| |||| Sbjct 22685550 GACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGCTCG 22685491 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | || || ||||| ||| | || | |||||||| |||||| |||| | || Sbjct 22685490 AGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGTTTCCTCGAT 22685431 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||| ||| | |||||||| | | |||||||| || || || Sbjct 22685430 GATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTACTTCTGATGTT 22685371 Query 159735 ACTATC 159740 || ||| Sbjct 22685370 ACCATC 22685365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552456024433600