Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3 230 3e-55 seq4 188 9e-43 >seq3 Length=44396707 Score = 230 bits (254), Expect = 3e-55 Identities = 428/624 (69%), Gaps = 7/624 (1%) Strand=Plus/Plus Query 180401 CAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCC 180460 |||| | || ||||||||||||| || ||||| ||||| || ||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 180461 ACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATT 180520 ||| ||||| || ||||||||||| || |||||| ||||| || || ||| |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 180521 CCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGT 180580 | | |||||| | || || || || || ||| | || || | || ||| || ||||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 180581 TGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACAC 180640 ||| ||| |||| || | || || ||| || || |||| | ||||| || || | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 180641 ACTGTA--TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAG 180698 | || |||| |||| || ||||| | || || ||| | ||| |||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 180699 GAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 180758 || |||||||| || |||||||| || |||||||| ||||| | ||||| || ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 180759 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 180818 ||||| || || | ||| | || || || ||||| ||||| || || | ||| || || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 180819 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 180878 | || ||| || | ||||| ||| | ||||| |||| || | ||| | Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 180879 CAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTA 180938 ||||| || | ||||| |||||||| || || || || |||||||| || || || || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 180939 TTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGAT---CAACCACACGAAAACTTC 180995 || || ||||| | || | ||| |||| || ||| || || || |||||| | Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 180996 ATCTTCCCTGAAGAAGTTCTACCA 181019 || ||| |||| || ||| ||||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCA 24110527 >seq4 Length=32756842 Score = 188 bits (208), Expect = 9e-43 Identities = 203/269 (75%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 179188 TATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 179247 ||||||| ||||| ||||||||| || | |||| ||||| |||| ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 179248 GCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 179307 ||||| || || | || || || | ||| || ||| | |||| || | |||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 179308 GGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 179367 || ||| ||| ||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 179368 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 179427 || ||||| || |||||||| ||||||||||| || || ||| | ||||| ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 179428 TTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 ||||| || | || || ||||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCA 25314965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610310183889600