Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 >seq7 Length=41685129 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||||| ||| | || | |||||| |||| |||||| Sbjct 36269583 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 36269524 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| ||||||||| | || || || || || || Sbjct 36269523 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGA 36269464 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| || || |||| || | ||||| ||||||||| |||||||| Sbjct 36269463 AACACCTATTCCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAATGTATCATATAT 36269404 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| ||||||||||| ||||| Sbjct 36269403 TCCCTCAATGCTATCATCCTTCATG 36269379 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||||| |||| | || | |||||| |||| |||||| Sbjct 5826853 TCCTCCTTGGTCAACATAACGAGCAGTGTCATTAAATACACGCAGCATTGGAACAATACC 5826794 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| |||||| || ||| ||| |||||||| || || || || ||| || Sbjct 5826793 ATTAGAAGCACCATTGGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGA 5826734 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | ||||| ||||||||| |||||||| Sbjct 5826733 AACACCGATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 5826674 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || ||||||||||| ||||| | ||||| ||||| Sbjct 5826673 CCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 5826632 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||| |||||||||||||| | || ||||| |||||||||||||| ||||| | | | || Sbjct 36270895 AAGGATAAATGCATCTGCAAGACCTTGAACACCAATACCGATAGGCCTATGACGCATGTT 36270836 Query 69141 TGAACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| ||| || | ||| | |||||| | ||| | ||| || || ||||| ||||| Sbjct 36270835 TGAAGTTTTAGCCGTCT-CCACAGGATAGTGATTCACATCAATGATCTTATTGAGATT 36270779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886947713800