Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027368.1 Length=33828 Score E Sequences producing significant alignments: (Bits) Value seq1239 145 2e-30 >seq1239 Length=2566 Score = 145 bits (160), Expect = 2e-30 Identities = 426/648 (66%), Gaps = 29/648 (4%) Strand=Plus/Plus Query 15250 TGCACATAAACAAGTTGTTGAAATCGGT-TTCGTTGTACTCTTCGCGCAGCTCGTCGATG 15308 ||||||| |||| | |||| || || | ||||| |||||| |||| || | | Sbjct 1794 TGCACATGAACA-GCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGG 1852 Query 15309 TCGAACAGGTCACAGCCACCCTTGGCGGCATCTTCAATCGTGACCACATAACGCCACTGC 15368 |||||||||| ||||| || | ||| |||| |||||||| || | ||||||||| Sbjct 1853 TCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGC 1912 Query 15369 TTATCCGGGCA-AAGGCGACCGCCATCGCGCAGTTCATCAAACGTTGGGAA----CTCGA 15423 |||||||| || ||| ||| ||| | | | | || | |||| | || Sbjct 1913 CCGTCCGGGCACAACGCG-CCGGCATGGATCTGCGCTTC----GCTGGGCCACGGCCCGG 1967 Query 15424 TGTTCTTGCGTCGTTCGCTGCCATCGCGCCATTTGTCCCCAGTCCAGAACGGGTAAGCGG 15483 ||||| | || | |||| | ||| | | || || |||||| |||| || || Sbjct 1968 CCTTCTTTCCGCGCTTGCTG---TTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCT 2024 Query 15484 GGTGCATTTTGGTTGAAGGGGTGGAAAAGTACGTCTTGCGCCACTTCTTATGCGTGGCCA 15543 ||||| || | || ||||| ||||| ||| ||||||||| ||||| ||||| Sbjct 2025 GGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCA 2084 Query 15544 TCGCTGAGGCGACTTTGTTCAGCTCGTCAAACTTGCCGATCCAGAAATACTCATCCACAT 15603 |||| ||| || | | ||||| | || ||| ||||||||| || || | | Sbjct 2085 TCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGT 2144 Query 15604 ACACATGGCCGTGGTAACTCTGCGCTGTTTTGCCATTGGTAGACAGGAAATGCAGCTCAG 15663 | || ||||||||||| |||||||| || |||| || || || || || |||| || | Sbjct 2145 AGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCG 2204 Query 15664 C---------GCC--ATTAG--AAAGCGTCATCGGGTTGCCGGAAAGTTCCAGCCCCAAA 15710 | ||| || | ||| | || || |||||||| || || | | || Sbjct 2205 CCCACGGCTTGCCGTCTTTGCTCAAG-ATGATGGGATTGCCGGACAGCTCGATATCGAAC 2263 Query 15711 AACTCTTTGGCGAGCGAAACAATATAGCGGCGGAACACTTCGGCCTGAGCGCGTGAAGCA 15770 | | ||||| || || || |||| |||||||||||||| ||| ||||| || Sbjct 2264 CATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCG 2323 Query 15771 GAGAGGAAAATCTGGTTGTCGCCAGTGAGAATCGCATTCTCTAGCGCTTCGCCACTGAAA 15830 || ||||||||||||||||| || || || | || | | | ||||||| | ||| Sbjct 2324 GACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAG 2383 Query 15831 TAGTAAGTTGCCCCTACTTGGCGCGATTTAAGAATGTTTCGAATACGC 15878 ||||| || ||| | |||||||| || || || | || || ||| Sbjct 2384 TAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 2431 Score = 95.1 bits (104), Expect = 3e-15 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 13813 TCGCCAACGGGTATCAGTTGAAT-GCCTTTCTCTTTCCCGTTCGGGATGTTCACAAACAT 13871 ||||| || || || | ||| || |||||| || ||| |||||||| || ||||| Sbjct 373 TCGCCGACCGGAATTATTTGGATCGCCTTT-TCAGAGCCGCCTGGGATGTTGACGAACAT 431 Query 13872 ACTGCGGAAGTTACCAA-TCCCTTTCGAGCTGGCGATCTTGTTTTTCAGTGCCTCTTCAT 13930 | |||||||||||| | |||||| | || | | |||| | |||||| |||||||| Sbjct 432 AGAGCGGAAGTTACCGACTCCCTTACTTGCCG-CAATCTGCTGTTTCAGATTCTCTTCAT 490 Query 13931 CTTCTTCACTCAAGTTCGGGTCGGTTGAGTAGAAAATAAACCCCATATGCGCACCGTTCA 13990 ||||||| ||| ||| |||| | | ||||| | | | || ||| || ||||| Sbjct 491 CTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATCCGGCATGGGCGCCGTTAC 550 Query 13991 GGTAATAACGGCGGCGAAACAGCGTCGC 14018 ||| || || ||||||||||| ||||| Sbjct 551 TGTAGTAGCGCCGGCGAAACAGTGTCGC 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108124732169100