Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 seq9 82.4 6e-11 >seq2 Length=44367670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || ||| ||| || ||||| || | ||| | | ||||||| | || || Sbjct 42352756 CGGCGGATTATAATGTCTGCTTGGAATCCTTCTGACCTTAAGGCGATGGCACTTCCTCCA 42352697 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| ||||||||||||| ||||| || || || |||||| ||||||| Sbjct 42352696 TGCCACATGTTTGCTCAGTTTTACGTTGCGAATGGAGAGCTTTCGTGTCAAATGTATCAG 42352637 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 | |||| ||| ||||| || || || || |||||||| || Sbjct 42352636 CGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGC 42352596 >seq9 Length=3036023 Score = 82.4 bits (90), Expect = 6e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTG 41105 |||||||| | || ||||| || |||| |||||||| ||| ||| |||| || || Sbjct 54863 TGATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTATGTT-GCATATGGAGAGCTT 54921 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || |||||| ||||||| | |||| |||||||| || || || ||||||||||| || Sbjct 54922 TCGTGTCAAATGTATCAGCGCTCAGCAGACATGGGTCTTGGTGTACCGTTTAACATTGC 54980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443672032725