Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6 105 2e-17 >seq6 Length=32494073 Score = 105 bits (116), Expect = 2e-17 Identities = 315/479 (66%), Gaps = 24/479 (5%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 || ||| | ||| ||||| | || | |||||||| || | |||||| |||||| Sbjct 29609002 GAGCGCCACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTC 29608943 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 ||||| || | | || ||| | ||| || || | ||||||||||| |||| Sbjct 29608942 GAGAACCTCGCCTCTCGGTTCATGTCCGACGTGCAGGTCT---CCGAGGCCCGCGCCTTC 29608886 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| |||||| ||| || |||||||| ||| ||||| | ||||||| || | || Sbjct 29608885 TACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGTT--AG 29608828 Query 443583 ACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCTCATC-----GTTCATGACCA 443637 | ||| | | || || | | || || ||| |||| || | || ||| | Sbjct 29608827 ATACTTACATC-AAGGATAATAGAGAGAGGG--ATCATCTCTTCCGCGCGATCGAGACGA 29608771 Query 443638 CGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCA 443697 || || || | | ||| | | ||||| |||| |||| || ||||| Sbjct 29608770 TCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCTTGACGTGGATCGACGGA-----TCTCA 29608716 Query 443698 G--CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 | ||| | |||| | | || || |||||| || ||||| | || || ||| || Sbjct 29608715 GGCCTTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAG 29608656 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| || || ||||||||| |||| |||||||| || |||| || || ||||| | Sbjct 29608655 CTTCTGC-TCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCA 29608597 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 |||| |||||| | |||||||| |||| ||||||||||| || || ||||| || Sbjct 29608596 ACGAGCTGATCTCGAGAGACGAGGGCCTGCACTGCGACTTCGCGTGCCTGATCTACTCC 29608538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588284207837525