Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 125 9e-24 seq4 123 3e-23 seq3 113 6e-20 seq6 100 4e-16 seq7 93.3 5e-14 seq1196 82.4 1e-10 >seq8 Length=44809562 Score = 125 bits (138), Expect = 9e-24 Identities = 296/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| ||||| | | ||| || || Sbjct 32327842 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 32327783 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 32327782 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 32327723 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | || || |||||||||||||| || | | | |||| | | ||| | || | Sbjct 32327722 AGCGTCTGCTCTCTCTCATCATTACCT--CCACCGATTCCAGTTCCCCTCTGCCTACCAA 32327665 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | ||||||||||| || | || ||||| || || ||| || ||| ||| || | Sbjct 32327664 CAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 32327605 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| || ||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 32327604 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAGA 32327545 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || ||| || ||| | |||||| || ||||| || | |||||| || || | Sbjct 32327544 TGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCCTTCGCCAAGAGGGTTTTACCAG 32327485 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||| | |||||| | ||| |||||| |||||| || | | Sbjct 32327484 TACCAGGAGGACCAACAAGAAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 32327425 Query 11868 TCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || | ||| ||||| ||||| Sbjct 32327424 TCTCAGGCTTCTTCAGAAACTCCAC 32327400 Score = 82.4 bits (90), Expect = 1e-10 Identities = 172/254 (68%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| | || |||| ||| | ||| ||||| | | ||||| Sbjct 29539982 TCAAGAATGTCTGCTCTATTGGGTGCAGCAACAACGATAATACCAGTGTTACCTTCAAAC 29539923 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| | || |||| | || || ||||| |||||||| || | Sbjct 29539922 CCATCCATCTCAG------ATAGATTCAAAGTCTGCTCTCTTTCATCATTACCTCC---A 29539872 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||||||||| | |||||||| || Sbjct 29539871 CCAATTCCTGTTCCTCTTTGCCTACCAACAGCATCAATCTCATCTACAAAGACAATGCAA 29539812 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || ||||| || ||||| |||||| ||||| ||| Sbjct 29539811 GGCGCGTTCTCCTTGGCCGTCTTGAAAAGATCACGGACCCTCGAGGCACCAACACCGACA 29539752 Query 11720 AACATCTCCACAAA 11733 || |||| |||||| Sbjct 29539751 AATATCT-CACAAA 29539739 Score = 82.4 bits (90), Expect = 1e-10 Identities = 136/196 (69%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || |||| || || || || || |||||| | || |||||||| || Sbjct 36833140 GTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAACCCAGGCATGAGCCC 36833199 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | |||||| ||||||||||| || || || || || Sbjct 36833200 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCGACGCA 36833259 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||| || || | | | ||||| || | | ||| |||| | ||| |||| || Sbjct 36833260 CGCGAAGGCCACGATCCTCTCGGCAAAAGTCTGGGAC---CCATCGATCCACGTCATGGC 36833316 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 36833317 CCATTGGGCCTTCTTC 36833332 >seq4 Length=32756842 Score = 123 bits (136), Expect = 3e-23 Identities = 298/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | ||| | ||| ||||| ||||| | | || || || Sbjct 20996484 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 20996425 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | | ||||| | | ||||| ||||||||||| || | | |||||| Sbjct 20996424 GCAACTACGATGACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGATTA 20996365 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| || | | | |||| | || Sbjct 20996364 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGCCTACCA 20996308 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | |||||||| || || ||||| ||| ||| || Sbjct 20996307 ACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTTTTGAAA 20996248 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 20996247 AGATCACGGACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCGAG 20996188 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | || | ||| || ||| | |||||| || ||||| || |||||||| || || Sbjct 20996187 -ATTGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAGGAGGGTTTTCCC 20996129 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 |||||| || ||| | || || | ||| ||||| |||||| || | Sbjct 20996128 CGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATTCGAGCACCAACCGCAGTGAA 20996069 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||| ||||| ||||| Sbjct 20996068 CCTCTCAGGCTTCTTCAGAAACTCCAC 20996042 >seq3 Length=44396707 Score = 113 bits (124), Expect = 6e-20 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| ||| | || ||||| | | ||||| Sbjct 13017452 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 13017393 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | || || | || || ||||| |||||||| || | Sbjct 13017392 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGCTCTCTTTCATCATTACCTCC---A 13017336 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||||||||| | |||||||| || Sbjct 13017335 CCAATTCCTGTTCCTCTTTGCCTACCAACAGCATCAATCTCATCTACAAAGACAATGCAA 13017276 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || ||||| || || || |||||| ||||| ||| Sbjct 13017275 GGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCTGGAGGCACCAACACCGACA 13017216 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | | ||| || ||| || ||| | |||||| || Sbjct 13017215 AACATCTCAACAAACTCAGATCCGGAGATGGAGAAGAACGGCACACCAGCTTCACCGGCA 13017156 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | || |||||||| ||||| || ||| || || | ||| Sbjct 13017155 ATAGCTTTCGCCAATAGCGTCTTTCCAGTACCAGGAGGACCAATAAGCAGAACACCTTTC 13017096 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 |||||| ||||||| | || | ||||| || | ||| ||||| ||||| | ||| Sbjct 13017095 GGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 13017037 >seq6 Length=32494073 Score = 100 bits (110), Expect = 4e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| |||| || || || || || |||||| || || |||||||| || Sbjct 29608565 GTGCAGGCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 29608624 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | |||||| ||||||||||| || || ||||| || Sbjct 29608625 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAATATCCCTTCCACGCA 29608684 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 |||||||| | | | ||||| |||| |||| | | || | ||| ||| || Sbjct 29608685 AGCAAACGCCACGATCCTCTCGGCAAAGGCCTGAGA---TCCGTCGATCCACGTCAAGGC 29608741 Query 122850 CCATTTCGCCTTCTTC 122865 ||||| ||||||||| Sbjct 29608742 CCATTGGGCCTTCTTC 29608757 >seq7 Length=41685129 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| || || || ||||||||||| || | Sbjct 18320017 AACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 18319960 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || ||||||| Sbjct 18319959 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAAAACAATAC 18319900 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | || | ||||| | ||| | ||| || ||||| ||||| | Sbjct 18319899 AAGGCGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCAACACCGA 18319840 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||| | ||| ||||| | | || | ||| || ||| || || | ||| || | Sbjct 18319839 CAAAAAGCTCAACAAACTCAGAAGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCTCCAG 18319780 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | ||||| || | || ||||| || || || || Sbjct 18319779 CCACGGCTCTAGCTAAAAGCGTCTTACCAGTCCCAGG 18319743 >seq1196 Length=238599 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 13/286 (5%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || ||||| | || | || ||||| || || | | ||| || || Sbjct 113509 CGGTCAAACCGTCCCGGCCTCAGCAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 113568 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| ||| | ||||||||| | | ||||| ||||||||||| || | |||| Sbjct 113569 GCAACAACGATAATGCCAGTGTTACCTTCAAACCCATCCATCTCAGT------TAGATTC 113622 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || | ||||| |||||||| || |||| || | | |||| | || Sbjct 113623 AAAGTCTTCTCTCTTTCATCATTACCT---CCACCAATTCCTGTTCCTTTTTGCCTACCA 113679 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||||||||||| | |||||||| || || || || ||| | | || Sbjct 113680 ACAACATCAATCTCATCTACAAAGACAATGCAAGGCGCGTTCTCCTTGGCCGTCTTGAAA 113739 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAA 11732 ||||| || ||| || |||||| ||||| |||||||||| ||||| Sbjct 113740 AGATCACGGACCTTTGAGGCACCAACACCGACAAACATCT-CACAA 113784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012020732000