Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 116 4e-21 seq4 111 2e-19 seq8 107 2e-18 seq3 104 3e-17 seq7 102 1e-16 >seq6 Length=32494073 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||| | || | || ||||| || || || || || |||||||| ||| || Sbjct 29608713 CCTTTGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCCGGTAGCT 29608654 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||| |||||||| || |||||||| || ||| ||||||||||| Sbjct 29608653 TCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAACG 29608594 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||| | |||||||| || ||| Sbjct 29608593 AGCTGATCTCGAGAGACGAGGGCCTGCAC 29608565 >seq4 Length=32756842 Score = 111 bits (122), Expect = 2e-19 Identities = 301/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | ||| | || ||||| ||||| | | || || || Sbjct 20996484 CGGTCAAAACGGCCTGGTCTAAGCAAGGCAGAGTCAAGAATATCTGCTCTGTTGGTTGCA 20996425 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | | ||| || | | ||||||||||||||||| ||||| || || ||| Sbjct 20996424 GCAACTACGATGACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGATTA 20996365 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| || | | | |||| | || Sbjct 20996364 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTACCA 20996308 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | ||||| ||||| || ||||| || || || Sbjct 20996307 ACAGCATCTATTTCATCCACAAAGACAATGCAGGGAGCGTTTTCCTTGGCCTTTTTGAAA 20996248 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || || |||| || || ||||| ||||||||||| ||||| | | | | Sbjct 20996247 AGATCACG--GACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGACCCCG 20996190 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | |||| | ||| || ||| || |||||| |||||||| || || || || || Sbjct 20996189 -AGATTGAAAAGAAAGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAGGAGGGTTTTC 20996131 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 |||||||| || ||| | ||||| ||||| || || || ||| || | Sbjct 20996130 CCCGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATTCGAGCACCAACCGCAGTG 20996071 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| ||||| ||||| | ||| Sbjct 20996070 AACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 20996036 >seq8 Length=44809562 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 ||||| || | ||||| |||| |||| | ||| ||| | | ||||| ||| | Sbjct 36833331 AAGAAGGCCCAATGGGCCATGACGTGGATCGATGG---GTCCCAGACTTTTGCCGAGAGG 36833275 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || ||||| || || || || |||||||| ||| ||||||| | || | Sbjct 36833274 ATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTTC 36833215 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||||||||| |||||||| || | ||||||||||||||| ||||| | Sbjct 36833214 TGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTGACCTTCTCCAACGAGCTGATCTCGAGA 36833155 Query 94930 GACGAGGGACTCCAC 94944 ||||| || || ||| Sbjct 36833154 GACGAAGGCCTGCAC 36833140 Score = 100 bits (110), Expect = 3e-16 Identities = 296/452 (65%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | || ||||| ||||| | | ||| || || Sbjct 32327842 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCTCTATTGGTTGCA 32327783 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || ||| Sbjct 32327782 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 32327723 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || || || | |||||||| || | | | |||| | | ||| | || | Sbjct 32327722 AGCGTCTGCTCTCTCTCATCATTACCT--CCACCGATTCCAGTTCCCCTCTGCCTACCAA 32327665 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | ||||||||||| || | || || ||||| || ||| || || || || | Sbjct 32327664 CAGCATCAATCTCGTCCACAAAAACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 32327605 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 |||| || || | | || || ||||| ||||||||||| ||||| | | | | | Sbjct 32327604 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AG 32327546 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | || ||| || ||| | |||||| |||||||| || | || || ||||| Sbjct 32327545 ATGGAGAAGAAAGGCACACCGGCTTCACCAGCAATGGCCTTCGCCAAGAGGGTTTTACCA 32327486 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 ||||| || ||| | || ||| ||||| || ||| || ||| || | | Sbjct 32327485 GTACCAGGAGGACCAACAAGAAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAAC 32327426 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||||||| | ||| ||||| ||||| | ||| Sbjct 32327425 CTCTCAGGCTTCTTCAGAAACTCCACCACTTC 32327394 >seq3 Length=44396707 Score = 104 bits (114), Expect = 3e-17 Identities = 276/415 (67%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 13017452 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 13017393 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || ||||| | ||| || || | ||||||||| || | Sbjct 13017392 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGCTCTCTTTCATCATTACCT---CCA 13017336 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||||||||| | ||||| ||||| Sbjct 13017335 CCAATTCCTGTTCCTCTTTGCCTACCAACAGCATCAATCTCATCTACAAAGACAATGCAA 13017276 Query 9734 GG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || | | | | | | ||| ||| ||||| || || | ||| || ||||| || Sbjct 13017275 GGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCTGGAGGCACCAACACCGAC 13017217 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| | Sbjct 13017216 AAACATCTCAACAAACTCAGATCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACCGG 13017158 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | || ||||| || ||||| || ||| || || ||||| Sbjct 13017157 CAATAGCTTTCGCCAATAGCGTCTTTCCAGTACCAGGAGGACCAATAAGCAGAACACCTT 13017098 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || ||| ||| ||| | || | | |||||||| | ||| ||||| ||||| Sbjct 13017097 TCGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 13017043 >seq7 Length=41685129 Score = 102 bits (112), Expect = 1e-16 Identities = 249/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || || ||||| || || |||| ||||||||| || | Sbjct 18320017 AACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 18319960 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| ||||| | | ||| | ||||| ||||||||||||||||| || || || | Sbjct 18319959 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAAAACAATAC 18319900 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 | || || | ||| ||||| | ||||| || || || | || || ||||| Sbjct 18319899 AAGGCGCCTTGGCCTTAGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCAACACC 18319842 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||| | ||| ||||| | | || | || || ||| || || || ||| || Sbjct 18319841 GACAAAAAGCTCAACAAACTCAGAAGCCGCGCAAGAGAAGAACGGCACTCCAGCTTCTCC 18319782 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||||| || | ||| |||||||| || || || || | ||||| || Sbjct 18319781 AGCCACGGCTCTAGCTAAAAGCGTCTTACCAGTCCCAGGAGGCCCAACAAGGAGACACCC 18319722 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | |||||||| ||||| || ||| | || || | ||| | ||| || |||| Sbjct 18319721 TTTAGGAATCTTAGCGCCCAAGGCAGTGTACTTGTCCGGATTCTTCAAAAAGTCGACAAC 18319662 Query 9970 TTCTTCCAATTC 9981 ||| | ||| || Sbjct 18319661 TTCCTGCAACTC 18319650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242245015800