Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 7e-14 >seq2 Length=44367670 Score = 91.5 bits (100), Expect = 7e-14 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| |||||| |||| | || || || ||||| |||| | ||| | Sbjct 40173782 CGTGTGCCAAATTGACCAATTGGTTGAAGTAGGTTTATGTTGTTGCTGCCAACATAATCC 40173723 Query 65147 TGAGCCATTCCGATAATTG--CTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| ||||| || | ||| | | |||| || |||||||||||| | |||| Sbjct 40173722 TGCGCCATACCGATGATCGTACTGGCT--AGACTCTGCTCGCCGTGATGATATGCCGAAT 40173665 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 | || || ||||| ||| ||||| |||| || ||| |||| |||||| |||||| Sbjct 40173664 GCTCTGATACATAACCAGAGAATTGGCCAACCTTGGCCTCCTTTGTGAAATTCCTTTTAA 40173605 Query 65265 ATGCAGAATACAATATTTTCC 65285 | | | || | | |||||||| Sbjct 40173604 ACGAACAAAAAAGTATTTTCC 40173584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235672689869250