Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 165 9e-36 seq8 150 2e-31 >seq6 Length=32494073 Score = 165 bits (182), Expect = 9e-36 Identities = 557/845 (66%), Gaps = 33/845 (4%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| ||| |||||| | |||||| || ||||| Sbjct 29609094 TGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGACC 29609035 Query 59653 TGAAGGATTGGGAC---AAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || ||||| || |||| ||| |||| || ||| |||| ||||| | Sbjct 29609034 CCCGCGACTGGGAGGAAAATCTCAGCGACGGAGAGCGCCACTTCGTCAAACACGTCCTCG 29608975 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT---GAACTTTTCCA 59766 |||||||||| || || || || || | || || | | | | | | ||| Sbjct 29608974 CCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAACCTCGCCTCTCGGTTCATGTCC- 29608916 Query 59767 AGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCT 59825 || || ||| | |||||||||| | ||||||| || ||| ||| | |||| Sbjct 29608915 --GACGTGCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCG-ATCGAGAAC 29608859 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| |||| ||| || | |||| | |||||||| ||||| | Sbjct 29608858 ATCCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAATAGAGAGAGG 29608799 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | | ||| ||||| || || |||||| ||||| || || | || || ||||||| Sbjct 29608798 GATCATCTCTTCCGCGCGATCGAGACGATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGC 29608740 Query 59945 CATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCAT 60000 | || |||||| | | ||| | ||| ||||| | | || | || ||||| | Sbjct 29608739 CTTGACGTGGATC-GAC--GGATC-TCAGGCCTTTGCCGAGAGGATCGTGGCGTTTGCTT 29608684 Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 |||||||||| || |||||||| || ||||| | || |||||||| || ||||||| Sbjct 29608683 GCGTGGAAGGGATATTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGTG 29608624 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 | ||||||||||| || | ||||||||||||||||| || | ||||||||||| || Sbjct 29608623 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGGCCTGCACT 29608564 Query 60121 AGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATATT 60179 || || || ||| | | |||| || | ||| ||| || || | || |||| Sbjct 29608563 GCGACTTCGC-GTGCCTGATCTACTCCCTCCT-GAGGACGAA-GCTC-TCGGAGGA-GCG 29608509 Query 60180 CACAAGATTGTTCAGTGGGC----TTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGC 60234 | || | | || ||| || ||| || | ||||| ||||| | || |||| Sbjct 29608508 CGTGAGGTCGATC-GTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGC 29608450 Query 60235 TTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCG 60294 | || ||| | | || ||| || || | |||| ||||| ||| |||| || | Sbjct 29608449 TCCCGTGCGCGTTGGTGGGGATGAACCGTGAACTGATGAGTCAGTATATTGAGTTCGTGG 29608390 Query 60295 CGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCG 60354 |||| | | ||| | |||| | || | ||||| ||| || || || | Sbjct 29608389 CGGATAGGTTGTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTG 29608330 Query 60355 ACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGG 60414 | ||||||||| |||||| | | ||||| || |||||||| |||||| |||| || | Sbjct 29608329 ATTGGATGGAGTTGATCTCGCTTCAGGGGAAAACTAACTTCTTCGAGAAGAGGGTTGGTG 29608270 Query 60415 ATTAT 60419 ||||| Sbjct 29608269 ATTAT 29608265 >seq8 Length=44809562 Score = 150 bits (166), Expect = 2e-31 Identities = 349/517 (68%), Gaps = 22/517 (4%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCC--GGAGACCTGAAGGATTGGGACAAGC 59670 || |||||| ||| |||||| | |||||| || ||| || | || ||||| || | Sbjct 36833646 TCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAGGACACACGC--GACTGGGAGAATC 36833589 Query 59671 TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATG 59730 |||| ||| |||| || |||||||| ||||| ||||||||||| || || | Sbjct 36833588 TCAACGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACG 36833529 Query 59731 GAATTGTGATGGAAAATATAGACAT---GAACTTTTCCAAGGATGTCCAGATTGCCGAGG 59787 |||| || | || ||| | | | | | | ||| || |||||| | |||||| Sbjct 36833528 GAATCGTCCTCGAGAATCTCGCCTCTCGGTTCATGTCC---GACGTCCAGGTCTCCGAGG 36833472 Query 59788 CCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCG 59846 | || | ||||||| || ||| ||| | |||| ||||||||||||| |||| Sbjct 36833471 CGCGCGCCTTCTACGGGTTCCAGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGC 36833413 Query 59847 CTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATA 59906 ||| || | || | || ||||||| | ||| || ||| ||||| || || Sbjct 36833412 CTCCTGTTAGACACGTACATCAAGGACAACAAGGAGCGGGACCATCTCTTCCGCGCGATC 36833353 Query 59907 GAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTC 59961 ||||| ||||| || || | || || ||||||||||| |||||| | ||| Sbjct 36833352 GAGACCATCCCCTGC-GTCGCGAAGAAGGCCCAATGGGCCATGACGTGGATCGATGGGTC 36833294 Query 59962 CTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 | || | ||||| | | || | || || || ||||| ||||| || ||||||| Sbjct 36833293 CCAGA----CTTTTGCCGAGAGGATCGTGGCCTTCGCGTGCGTCGAAGGGATATTCTTCT 36833238 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | || ||||| | || |||||||| || ||||| || |||||||| || ||| | Sbjct 36833237 CCGGTAGCTTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCTGGGTTGACCT 36833178 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||||| || | ||||| ||||| || Sbjct 36833177 TCTCCAACGAGCTGATCTCGAGAGACGAAGGCCTGCA 36833141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507350054800