Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 2e-13 seq5 91.5 2e-13 seq1 89.7 6e-13 seq949 86.0 7e-12 seq542 86.0 7e-12 seq9 86.0 7e-12 seq7 86.0 7e-12 seq4 86.0 7e-12 seq3 86.0 7e-12 seq2 86.0 7e-12 >seq8 Length=44809562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 43626662 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 43626603 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 43626602 TGAGCTACGAGAGCA 43626588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 33857471 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33857412 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 33857411 TGAGCTATGAAAGC 33857398 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 39049316 GATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 39049257 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 39049256 AACTGAGCTATGAAAGC 39049240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 40268288 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 40268347 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 40268348 ACTGAGCTACGAGAGC 40268363 >seq5 Length=39062406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 7029793 GAATGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 7029852 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 7029853 AACTGAGCTACGAGAGC 7029869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 31413837 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 31413896 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 31413897 TGAGCTATGAAAGC 31413910 >seq1 Length=30920229 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 25563027 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25562968 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 25562967 TGAGCTACGAGAGC 25562954 >seq949 Length=1849242 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 55313 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 55372 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 55373 TGAGCTATGAAAGC 55386 >seq542 Length=269615 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 257409 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 257468 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 257469 TGAGCTACGAGAGC 257482 >seq9 Length=3036023 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 636268 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 636209 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 636208 TGAGCTATGAAAGC 636195 >seq7 Length=41685129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 32530125 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 32530184 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 32530185 TGAGCTATGAAAGC 32530198 >seq4 Length=32756842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2341254 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2341313 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2341314 TGAGCTATGAAAGC 2341327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6050095 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6050036 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 6050035 TGAGCTATGAAAGC 6050022 >seq3 Length=44396707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 33088289 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33088230 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 33088229 TGAGCTATGAAAGC 33088216 >seq2 Length=44367670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 34439446 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34439387 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 34439386 TGAGCTATGAAAGC 34439373 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 36362183 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36362242 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 36362243 TGAGCTATGAAAGC 36362256 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 36362372 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36362431 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 36362432 TGAGCTATGAAAGC 36362445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198591691000