Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 >seq2 Length=44367670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||||||||| | ||| | || || || ||||| || |||||||| ||||| || || Sbjct 42352559 GACGTGAGCGAGGATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTACACCAAG 42352618 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAA 30068 ||||| || | || | ||| || | |||||||| |||||||| | ||| ||||||| Sbjct 42352619 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 42352677 Query 30069 ACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAA-GTCTTTGGGGTTC 30124 |||| | |||| |||||| |||||||| ||||| | | || ||| || ||| Sbjct 42352678 ACTGAGCAAACAT---GTGGCATGGAGGAAGTGCCAT-CGCCTTAAGGTCAGAAGGATTC 42352733 Query 30125 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || || ||| || || |||| || || || |||||| |||| Sbjct 42352734 CAAGCAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 42352777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406297797394140