Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 >seq4 Length=32756842 Score = 185 bits (204), Expect = 1e-41 Identities = 193/252 (77%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||| |||| || | ||||||||||||| | | || || || |||| |||||| ||| Sbjct 25315234 TTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGT 25315175 Query 176499 TGCATACTCTGCACCAGTATCTGCA---GCGATGGCAGTTTTCCTCGTCTATCCATTCGG 176555 |||||| || || | || |||| | || || |||||| | |||| ||| | || Sbjct 25315174 TGCATATTCAGCTTCTGT---TGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGG 25315118 Query 176556 TCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTT 176615 ||||||| ||| ||| ||||||||||||| || || || ||||| |||||||||||| | Sbjct 25315117 TCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGT 25315058 Query 176616 TGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGG 176675 |||||| ||||| |||||||||||||| ||||||||||| || ||| | || ||||| || Sbjct 25315057 TGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 25314998 Query 176676 TGTGTTTGGTGG 176687 ||| || || || Sbjct 25314997 TGTATTCGGCGG 25314986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603475201334400