Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq1239 131 4e-26 >seq1239 Length=2566 Score = 131 bits (144), Expect = 4e-26 Identities = 288/431 (67%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 19847 CGCATCCGCGATATCCTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAG 19906 || |||||| |||||||||| || |||||||| || ||| | || || || ||| Sbjct 2430 CGGATCCGCCATATCCTGAAGTCGCGCCAGATCGGGCTGACCTACTACTTCGCCGCCGAA 2371 Query 19907 GCGCTGCTGCGCGCCCTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACG 19966 ||| | || ||| || ||||| | ||||||||||| ||||| || || | Sbjct 2370 GCGTTCATGGACGCAGTGCTGACCGGGGACAACCAGATTTTCCTGTCCGCGAGCCGCGCC 2311 Query 19967 CAGGCGTATGTGTTCCGCGAATACATCATCGCCTTTGCCCGGC--TGGTT-GACGTTGAC 20023 ||| | | ||||||||| |||||| |||| || ||| || ||||| || | || Sbjct 2310 CAGTCCGAAGTGTTCCGCAGCTACATCGTCGCGTTCGCCGCGCAATGGTTCGATATCGAG 2251 Query 20024 CTGACCGGTGACCCGATTGTCCTGGGCAATAACGGC---------GCAAAACTGATTTTT 20074 ||| |||| | || || || || |||| ||||| || ||||| ||| Sbjct 2250 CTGTCCGGCAATCCCATCATCTTGAGCAAAGACGGCAAGCCGTGGGCGGAACTGCGGTTT 2191 Query 20075 CTCGGCACCAACTCCAACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATT 20134 ||| || ||| |||||| || |||||| | ||||| || | ||| ||||||| | Sbjct 2190 CTCTCGACGAACAGCAACACGGCGCAGAGCTACCACGGCCACGTCTACATCGACGAAGTG 2131 Query 20135 TTCTGGATCCCGAATTTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGT 20194 ||||||||||| ||||| ||| |||| | |||||| | |||||||| || Sbjct 2130 TTCTGGATCCCCAATTTCCAGAAGCTGCAGACGGTGGCCAGCGCGATGGCCTCGCATGCA 2071 Query 20195 CACCTGCGCTCGACCTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCCTACCCGTTC 20254 | |||| |||||| |||||||| || | || | ||||| | || || |||| | Sbjct 2070 AAGTGGCGCCTGACCTACTTCTCCACGCCCAGCGCGGTAACGCACCAGGCATATCCGTAC 2011 Query 20255 TGGTCGGGTGA 20265 ||| | || || Sbjct 2010 TGGACCGGCGA 2000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104435243675730