Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq3 152 6e-32 seq4 141 1e-28 seq5 134 2e-26 >seq3 Length=44396707 Score = 152 bits (168), Expect = 6e-32 Identities = 396/600 (66%), Gaps = 24/600 (4%) Strand=Plus/Plus Query 191226 TAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGTTGCAGCAA 191285 |||| |||||||| ||||| ||||||||||| ||| ||||| || || || | Sbjct 24109956 TAATTTATCCACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTA 24110015 Query 191286 TCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAACCCTTTCCACA 191345 | ||| ||| || || || | ||||| || || ||| |||| || | || || Sbjct 24110016 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATT 24110075 Query 191346 TGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCATGGTGCTACAG 191405 || ||||| |||| ||| | || || | || | |||| || ||| |||||||||| | Sbjct 24110076 TGCTGGGAATTGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTG 24110135 Query 191406 TACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGTTCAAAGTACAA 191465 || | || | || ||| || || ||||| | | | || || | Sbjct 24110136 TAGA-AATATTTTTTAT-----CTGAAA-----------ATGGTGATGGTGCAAATAAA- 24110177 Query 191466 CCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACA 191525 || | || ||| | |||| || | || ||||||||||| ||| |||| || ||| Sbjct 24110178 --TTATGTGCTTTTAACCCAATTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACC 24110235 Query 191526 GATTCTGGTCACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGA 191585 | || ||||||| || ||||| ||| || || || ||| | |||| ||||| | Sbjct 24110236 GCTTTTGGTCACGAATCTTTGGGGCTGCTTTTTCCAATAAACATTGGTTACAATTCTTTA 24110295 Query 191586 TGTTGTTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCAC 191645 |||| ||||| || |||| || | ||| | | | || |||||||| || Sbjct 24110296 TGTTATTTGTACCAGTAACTGGTTTAAGGATGAGTGCTCTTGTAATAGTAGGTCTAGCTT 24110355 Query 191646 TTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGT 191705 | ||| || | || |||| || | || ||||| || | ||||| ||||| || || Sbjct 24110356 TGAACCTATGTGCCTATGGCTTCATTTCCCAAGAAATTTGTGCAGCGGAAGATCCGGA-C 24110414 Query 191706 TTGAAACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTC-- 191763 ||||||| ||||| ||||| || |||||| | || |||||||| | | |||||| | Sbjct 24110415 TTGAAACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGCACTTGGATGGCGG 24110474 Query 191764 TTCAGTA-GACCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAA 191822 |||| | | || |||||||| ||| || | ||| | ||||| ||| |||| | |||| Sbjct 24110475 CTCAGGATCAGCAGCCTCATGAAAACATTATATTCACTGAGGAGGTTTTACCACGTGGAA 24110534 >seq4 Length=32756842 Score = 141 bits (156), Expect = 1e-28 Identities = 183/250 (73%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 190025 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCA---GCATTT 190081 || ||||| | | |||||| |||||| |||||||| | || |||| | || Sbjct 25315200 CTGGGTATACGTCTTTGGATTGCTGTTGCATATTCAGCTTCTGT---TGCAATTGTTATT 25315144 Query 190082 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGT 190141 || || ||| | | |||||| ||||||| || || ||| ||||||||||| |||| Sbjct 25315143 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGA 25315084 Query 190142 ATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCAC 190201 ||||| ||||| |||||||| ||| ||||||| ||||| || || || || ||||||||| Sbjct 25315083 ATCTCTGGTACTTTCAACTTTATGGTTGTATTTCAAGCTGAGCACAACATTCTTATGCAC 25315024 Query 190202 CCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTATTCTCTGCAATGCAT 190261 ||||| || ||| ||||||||| ||| | || || || |||| ||| |||||| Sbjct 25315023 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCAT 25314964 Query 190262 GGTTCACTTG 190271 |||| |||| Sbjct 25314963 AGTTC-CTTG 25314955 >seq5 Length=39062406 Score = 134 bits (148), Expect = 2e-26 Identities = 125/156 (80%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 182575 TTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAACTGAGGATTGTGTAGG 182634 ||||||||| || ||||| |||||||| ||||| | || ||||| ||||||||||| || Sbjct 4107971 TTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCCCCAAGAACCGAGGATTGTGTTGG 4108030 Query 182635 ATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTTGGG 182694 ||||||||||||||| | || ||||| || || ||||| || |||| ||||| || | Sbjct 4108031 TTGTAAGAGATGTGAATCTGCCTGTCCAACGGATTTTTTGAGCGTTCGAGTTTATTTATG 4108090 Query 182695 TGCA-GAAACCACAAGAAGCATGGGTCTAGCATATT 182729 ||| ||||| || |||| ||||||||||| |||| Sbjct 4108091 -GCATGAAACAACTCGAAGTATGGGTCTAGCTTATT 4108125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631407112722200