Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1239 116 7e-22 >seq1239 Length=2566 Score = 116 bits (128), Expect = 7e-22 Identities = 651/1011 (64%), Gaps = 57/1011 (6%) Strand=Plus/Plus Query 1555 CACCAACTGGAATACACCGAGACCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTT 1614 ||||| | ||| || ||| ||||| ||| || ||| |||||||||| | |||||| Sbjct 1447 CACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTT 1506 Query 1615 GTATTTCTCAGTGAGCCTGCGGATG-GCTTCTGCCTGC-GCGGCAAAGTCCATGCCTTTC 1672 | | ||| ||| | ||| |||| |||||| ||| || | | | || | Sbjct 1507 GAAGCGCTCGCACAGCTTCTCGATCTGCTT-TGCCTGATGCGTGAACGACG-TCCCCCGC 1564 Query 1673 CACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACG 1732 || ||| |||||| || || |||||||| |||| ||| ||||| || | || Sbjct 1565 CAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACA 1624 Query 1733 ACACATCCGGCACTGTCGCCG-GTGTGGGAC--GGGTCGTAGCCAATCCAGACCGGGCGC 1789 || || || | | |||| || | || ||| ||||| || || | |||||||||||| Sbjct 1625 ACGCA--CGTCGC-GTCGTCGCGGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGG 1681 Query 1790 GAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACC 1849 | |||| || | | | |||| || |||| |||| ||| || || Sbjct 1682 TTGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAAT 1739 Query 1850 ATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGA-TGCCTTATCGTCGACAAACTCGCA 1908 | |||||||| ||| || || | |||| | | || | | ||||| |||| ||| Sbjct 1740 A-GCAGCGCTCCAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCT-GTCGATGAACTTGCA 1797 Query 1909 CATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTG-AGCTGGTCGAGGTCGA 1967 ||| ||||| | | ||| ||| || || || | ||| || | || ||||||| Sbjct 1798 CATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAG-CTGCAGGCGCTCCAGGTCGA 1856 Query 1968 ACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGT 2027 ||||| ||||||| ||||| | |||||| | ||| |||| | || |||||||| |||| Sbjct 1857 ACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGT 1916 Query 2028 CAGCGCAAAGAAGCCCACCGGC---GAGC-GCGCTGTGACTGATGTCGATTTCGATGCGG 2083 | | ||| | | | ||||| || | ||||| | ||| | | | || ||| Sbjct 1917 CCGGGCACAA---CGCGCCGGCATGGATCTGCGCTTCG-CTG--GGCCA---CGGCCCGG 1967 Query 2084 TCAGCGGCACTGGCGCGCCCCTTGTTG---AACAGCTCGCCAGACCAGAAGGGGTAAGCG 2140 | | | ||||| ||||| ||| |||||| | |||| | || || || Sbjct 1968 CCTTCT----TTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCC 2023 Query 2141 CCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTT---TGCGAG 2197 ||||| | || | || || || ||||| || |||| |||| |||||| Sbjct 2024 TGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCA---CTTTGCATGCGAG 2080 Query 2198 GCCATGCCCGAT-GCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATC 2256 ||||| | || | || || | |||||||||| ||||| ||||||||||| | ||| || Sbjct 2081 GCCAT-CGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTC 2139 Query 2257 GACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAG 2316 || || | || ||||| | |||||| || |||||| || || |||||| ||| Sbjct 2140 GATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAG 2199 Query 2317 CTTTGC---------GCCGTTGTTGCCGATGACAATCGGGTCGCCGGTCAGGTCGACGTC 2367 | || ||||| |||| | || || || | ||||| ||| |||| || Sbjct 2200 TTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATC 2259 Query 2368 -AACCAGT-CGC-GCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACT 2424 ||||| | ||| || ||| || |||||| |||||||| | | ||| | || Sbjct 2260 GAACCATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCT 2319 Query 2425 GGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGA 2484 || ||||| ||||||||||| | |||||| | ||| || | || ||| || Sbjct 2320 CGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGC 2379 Query 2485 AAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACG 2535 |||||| | ||| || |||||||| || || || |||| ||| || || Sbjct 2380 GAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCG 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95021128196550